A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

R

RADIAL - Static variable in class ucl.physiol.neuroconstruct.project.MaxMinLength

RADIAN - Static variable in class ucl.physiol.neuroconstruct.utils.units.Units

RAND_STIM_VAR_MOD - Static variable in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

RAND_STIM_VAR_RATE_EXPR - Static variable in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

RANDOM - Static variable in class ucl.physiol.neuroconstruct.utils.equation.BasicFunctions

RANDOM_CLOSE - Static variable in class ucl.physiol.neuroconstruct.project.SearchPattern

RANDOM_NUM - Static variable in class ucl.physiol.neuroconstruct.utils.NumberGenerator

RandomCellPackingAdapter - Class in ucl.physiol.neuroconstruct.project.packing

Cell packing adapter which places a number of cells in random locations in the specified region

RandomCellPackingAdapter() - Constructor for class ucl.physiol.neuroconstruct.project.packing.RandomCellPackingAdapter

randomCloseNumber - Variable in class ucl.physiol.neuroconstruct.project.SearchPattern

Needed only where searchPattern = RANDOM_CLOSE.

RandomFunctionUnit - Class in ucl.physiol.neuroconstruct.utils.equation.functions

Helper class for parsing equations.

RandomFunctionUnit(EquationUnit) - Constructor for class ucl.physiol.neuroconstruct.utils.equation.functions.RandomFunctionUnit

RandomFunctionUnit() - Constructor for class ucl.physiol.neuroconstruct.utils.equation.functions.RandomFunctionUnit

RandomSpikeTrain - Class in ucl.physiol.neuroconstruct.project.stimulation

Settings specifically for single NetStim/randomspike like stimulation

RandomSpikeTrain() - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrain

RandomSpikeTrain(NumberGenerator, String) - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrain

RandomSpikeTrain(NumberGenerator, float, String) - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrain

Deprecated.

RandomSpikeTrainExt - Class in ucl.physiol.neuroconstruct.project.stimulation

Settings specifically for NetStim/randomspike like stimulation, extended to allow specification of duration etc.

RandomSpikeTrainExt() - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainExt

RandomSpikeTrainExt(NumberGenerator, String, NumberGenerator, NumberGenerator, boolean) - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainExt

RandomSpikeTrainExtInstanceProps - Class in ucl.physiol.neuroconstruct.project.stimulation

Helper class for info on variations in amplitude, etc.

RandomSpikeTrainExtInstanceProps() - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainExtInstanceProps

RandomSpikeTrainExtSettings - Class in ucl.physiol.neuroconstruct.simulation

Settings specifically for extended NetStim/randomspike like stimulation Note: not the best package for this, but unfortunately the stored XML project files reference this class...

RandomSpikeTrainExtSettings() - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainExtSettings

RandomSpikeTrainExtSettings(String, String, CellChooser, int, NumberGenerator, String, NumberGenerator, NumberGenerator, boolean) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainExtSettings

RandomSpikeTrainExtSettings(String, String, CellChooser, SegmentLocationChooser, NumberGenerator, String, NumberGenerator, NumberGenerator, boolean) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainExtSettings

RandomSpikeTrainInstanceProps - Class in ucl.physiol.neuroconstruct.project.stimulation

Helper class for info on variations in amplitude, etc.

RandomSpikeTrainInstanceProps() - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainInstanceProps

RandomSpikeTrainSettings - Class in ucl.physiol.neuroconstruct.simulation

Settings specifically for NetStim/randomspike like stimulation Note: not the best package for this, but unfortunately the stored XML project files reference this class...

RandomSpikeTrainSettings() - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainSettings

RandomSpikeTrainSettings(String, String, CellChooser, int, NumberGenerator, String) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainSettings

RandomSpikeTrainSettings(String, String, CellChooser, int, NumberGenerator, float, String) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainSettings

Deprecated.

RandomSpikeTrainSettings(String, String, CellChooser, SegmentLocationChooser, NumberGenerator, String) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainSettings

RandomSpikeTrainSettings(String, String, CellChooser, SegmentLocationChooser, NumberGenerator, float, String) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainSettings

Deprecated.

RandomSpikeTrainVariable - Class in ucl.physiol.neuroconstruct.project.stimulation

Settings specifically for NetStim/randomspike like stimulation, extended to allow variable rate

RandomSpikeTrainVariable() - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainVariable

RandomSpikeTrainVariable(String, String, NumberGenerator, NumberGenerator) - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainVariable

RandomSpikeTrainVariableSettings - Class in ucl.physiol.neuroconstruct.simulation

Settings specifically for extended NetStim/randomspike like stimulation Note: not the best package for this, but unfortunately the stored XML project files reference this class...

RandomSpikeTrainVariableSettings() - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainVariableSettings

RandomSpikeTrainVariableSettings(String, String, CellChooser, int, String, String, NumberGenerator, NumberGenerator) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainVariableSettings

RandomSpikeTrainVariableSettings(String, String, CellChooser, SegmentLocationChooser, String, String, NumberGenerator, NumberGenerator) - Constructor for class ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainVariableSettings

RandomSpikeTrainVarInstanceProps - Class in ucl.physiol.neuroconstruct.project.stimulation

Helper class for info on variations in amplitude, etc.

RandomSpikeTrainVarInstanceProps() - Constructor for class ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainVarInstanceProps

RANDOMSTIM_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.NetworkMLConstants

RANDOMSTIM_INSTANCE_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.NetworkMLConstants

rasterise(RasterOptions) - Method in class ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame

RasterOptions - Class in ucl.physiol.neuroconstruct.gui.plotter

Class to store info on options for showing a raster plot

RasterOptions() - Constructor for class ucl.physiol.neuroconstruct.gui.plotter.RasterOptions

RATE_ATTR - Static variable in class ucl.physiol.neuroconstruct.neuroml.ChannelMLConstants

RATE_NAME_ATTR - Static variable in class ucl.physiol.neuroconstruct.neuroml.ChannelMLConstants

rateUnits - Static variable in class ucl.physiol.neuroconstruct.utils.units.UnitConverter

read2dDataFileToArrays(File, double) - Static method in class ucl.physiol.neuroconstruct.simulation.SimulationData

readShortFile(File) - Static method in class ucl.physiol.neuroconstruct.utils.GeneralUtils

RecentFiles - Class in ucl.physiol.neuroconstruct.utils

Handy class for storing recently opened files, and other goodies such as last directories in which various files were opened.

RecentFiles() - Constructor for class ucl.physiol.neuroconstruct.utils.RecentFiles

Don't use! Should be private, but XMLEncoder doesn't like that...

recompartmentaliseCell(Cell, float, Project, boolean, boolean) - Static method in class ucl.physiol.neuroconstruct.cell.utils.CellTopologyHelper

recompartmentaliseCell(Cell, float, Project) - Static method in class ucl.physiol.neuroconstruct.cell.utils.CellTopologyHelper

RECORD_EVERY_SEGMENT - Static variable in class ucl.physiol.neuroconstruct.simulation.SimulationParameters

RECORD_ONLY_SOMA - Static variable in class ucl.physiol.neuroconstruct.simulation.SimulationParameters

recordSimulationSummary(Project, SimConfig, File, String, MorphCompartmentalisation) - Static method in class ucl.physiol.neuroconstruct.simulation.SimulationsInfo

Creates a record of the main simulation parameters in a properties file in the simulation data directory.

RectangularBox - Class in ucl.physiol.neuroconstruct.project

Extension of Regions in 3D

RectangularBox() - Constructor for class ucl.physiol.neuroconstruct.project.RectangularBox

RectangularBox(float, float, float, float, float, float) - Constructor for class ucl.physiol.neuroconstruct.project.RectangularBox

refresh() - Method in class ucl.physiol.neuroconstruct.dataset.DataSetInfo

refresh(boolean) - Method in class ucl.physiol.neuroconstruct.simulation.SimulationsInfo

refresh3D() - Method in class ucl.physiol.neuroconstruct.j3D.Base3DPanel

refresh3D() - Method in class ucl.physiol.neuroconstruct.j3D.Main3DPanel

refresh3D() - Method in class ucl.physiol.neuroconstruct.j3D.OneCell3DPanel

refreshAll() - Method in class ucl.physiol.neuroconstruct.gui.MainFrame

Refreshes the tabs, frame title, etc.

refreshAll3D() - Method in class ucl.physiol.neuroconstruct.j3D.Main3DPanel

refreshAll3D() - Method in interface ucl.physiol.neuroconstruct.j3D.SimulationInterface

refreshGroup(String) - Method in class ucl.physiol.neuroconstruct.j3D.OneCell3DPanel

refreshGroup(String) - Method in interface ucl.physiol.neuroconstruct.j3D.UpdateOneCell

refreshVoltagesCurrTimeStep() - Method in class ucl.physiol.neuroconstruct.gui.SimulationRerunFrame

REGION - Static variable in class ucl.physiol.neuroconstruct.gui.ClickProjectHelper

Region - Class in ucl.physiol.neuroconstruct.project

Base class for Regions in 3D.

Region() - Constructor for class ucl.physiol.neuroconstruct.project.Region

Region(String) - Constructor for class ucl.physiol.neuroconstruct.project.Region

REGION_NAME - Static variable in class ucl.physiol.neuroconstruct.project.cellchoice.RegionAssociatedCells

REGION_NAME_DESC - Static variable in class ucl.physiol.neuroconstruct.project.cellchoice.RegionAssociatedCells

RegionAssociatedCells - Class in ucl.physiol.neuroconstruct.project.cellchoice

Extension of CellChooser.

RegionAssociatedCells() - Constructor for class ucl.physiol.neuroconstruct.project.cellchoice.RegionAssociatedCells

RegionAssociatedCells(String) - Constructor for class ucl.physiol.neuroconstruct.project.cellchoice.RegionAssociatedCells

RegionColourEditor - Class in ucl.physiol.neuroconstruct.gui

Implementation of AbstractCellEditor for region colour column

RegionColourEditor() - Constructor for class ucl.physiol.neuroconstruct.gui.RegionColourEditor

regionsInfo - Variable in class ucl.physiol.neuroconstruct.project.Project

RegionsInfo - Class in ucl.physiol.neuroconstruct.project

Extension of AbstractTableModel to store the info on the regions

RegionsInfo() - Constructor for class ucl.physiol.neuroconstruct.project.RegionsInfo

RegionsInfoDialog - Class in ucl.physiol.neuroconstruct.gui

Dialog to specify Region parameters

RegionsInfoDialog(Dialog, Region, String) - Constructor for class ucl.physiol.neuroconstruct.gui.RegionsInfoDialog

RegionsInfoDialog(Frame, Region, String) - Constructor for class ucl.physiol.neuroconstruct.gui.RegionsInfoDialog

RegionsInfoDialog() - Constructor for class ucl.physiol.neuroconstruct.gui.RegionsInfoDialog

RegionTypeHelper - Class in ucl.physiol.neuroconstruct.project

Helper class for getting list of Region types

RegionTypeHelper() - Constructor for class ucl.physiol.neuroconstruct.project.RegionTypeHelper

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.cellchoice.AllCells

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.cellchoice.CellChooser

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.cellchoice.FixedNumberCells

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.cellchoice.IndividualCells

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.cellchoice.PercentageOfCells

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.cellchoice.RegionAssociatedCells

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.segmentchoice.GroupDistributedSegments

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.segmentchoice.IndividualSegments

reinitialise() - Method in class ucl.physiol.neuroconstruct.project.segmentchoice.SegmentLocationChooser

reinitialiseCMLMechs(Project) - Method in class ucl.physiol.neuroconstruct.mechanisms.CellMechanismInfo

reinitialiseRandomGenerator() - Static method in class ucl.physiol.neuroconstruct.project.ProjectManager

Uses current seed to setup Random number generator.

RelationalOperator - Class in ucl.physiol.neuroconstruct.utils.equation

Helper class for parsing equations

RELATIVE - Static variable in class ucl.physiol.neuroconstruct.project.packing.SinglePositionedCellPackingAdapter

reloadSimulation(String) - Method in class ucl.physiol.neuroconstruct.project.ProjectManager

reMesh() - Method in class ucl.physiol.neuroconstruct.gui.SegmentSelector

RemoteLogin - Class in ucl.physiol.neuroconstruct.hpc.mpi

Support for interacting with MPI platform *** STILL IN DEVELOPMENT! SUBJECT TO CHANGE WITHOUT NOTICE! ***

RemoteLogin() - Constructor for class ucl.physiol.neuroconstruct.hpc.mpi.RemoteLogin

RemoteLogin(String, String, String, Hashtable<MpiSettings.KnownSimulators, String>) - Constructor for class ucl.physiol.neuroconstruct.hpc.mpi.RemoteLogin

remotePullScriptName - Static variable in class ucl.physiol.neuroconstruct.hpc.mpi.RemoteLogin

remove(SimConfig) - Method in class ucl.physiol.neuroconstruct.project.SimConfigInfo

removeAll() - Method in class ucl.physiol.neuroconstruct.gui.ClickPanel

removeAllBiophysics() - Method in class ucl.physiol.neuroconstruct.cell.Cell

For example to compare cells ignoring biophysical properties

removeAllContents() - Method in class ucl.physiol.neuroconstruct.utils.xml.SimpleXMLElement

removeAllFiles(File, boolean, boolean, boolean) - Static method in class ucl.physiol.neuroconstruct.utils.GeneralUtils

removeAllSynapseInfo() - Method in class ucl.physiol.neuroconstruct.cell.Cell

For example to compare cells ignoring biophysical properties

removeDataSet(DataSet) - Method in class ucl.physiol.neuroconstruct.gui.plotter.PlotCanvas

removeDataSet(DataSet) - Method in class ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame

removeFromGroup(String) - Method in class ucl.physiol.neuroconstruct.cell.Section

removeFromList(File) - Method in class ucl.physiol.neuroconstruct.utils.RecentFiles

removeProblemDueToBarSpacing() - Method in class ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame

removeShownColumn(String) - Method in class ucl.physiol.neuroconstruct.gui.SimulationBrowser

removeShownColumn(String) - Method in class ucl.physiol.neuroconstruct.simulation.SimulationsInfo

removeTempAppearance(String) - Method in class ucl.physiol.neuroconstruct.j3D.Main3DPanel

Removes the temp appearance of the whole cell.

removeTempAppearance(String) - Method in interface ucl.physiol.neuroconstruct.j3D.SimulationInterface

removeTreeModelListener(TreeModelListener) - Method in class ucl.physiol.neuroconstruct.simulation.SimulationsInfo

removeUpdate(DocumentEvent) - Method in class ucl.physiol.neuroconstruct.gui.RegionsInfoDialog

removeUpdate(DocumentEvent) - Method in class ucl.physiol.neuroconstruct.gui.SegmentSelector

removeUpdate(DocumentEvent) - Method in class ucl.physiol.neuroconstruct.gui.SimConfigManager

renameGroup(String, String) - Method in class ucl.physiol.neuroconstruct.cell.Cell

reorderAlphabetically(File[], boolean) - Static method in class ucl.physiol.neuroconstruct.utils.GeneralUtils

reorderAlphabetically(AbstractList, boolean) - Static method in class ucl.physiol.neuroconstruct.utils.GeneralUtils

reorderSegsParentsFirst(Cell) - Static method in class ucl.physiol.neuroconstruct.cell.utils.CellTopologyHelper

Useful to call when the cell has been restructured/recompartmentalised Causes the parents of segments always to precede the segments, even if parent id > seg id Needed to display the cells properly in 3d

repaint() - Method in class ucl.physiol.neuroconstruct.gui.plotter.PlotCanvas

repaint() - Method in class ucl.physiol.neuroconstruct.gui.view2d.ViewCanvas

repaint3DScene() - Method in class ucl.physiol.neuroconstruct.j3D.OneCell3DPanel

replaceAllTokens(String, String, String) - Static method in class ucl.physiol.neuroconstruct.utils.GeneralUtils

Replaces all occurances of the old token with the new one

replaceToken(String, String, String, int) - Static method in class ucl.physiol.neuroconstruct.utils.GeneralUtils

Replaces the first occurance of the old token with the new one from the specified index

ReplaySettings - Class in ucl.physiol.neuroconstruct.utils

A number of settings required from the user

ReplaySettings() - Constructor for class ucl.physiol.neuroconstruct.utils.ReplaySettings

REPORT_FILE_ATTR - Static variable in class ucl.physiol.neuroconstruct.neuroml.LemsConstants

reset() - Method in class ucl.physiol.neuroconstruct.cell.compartmentalisation.SegmentLocMapper

reset() - Method in class ucl.physiol.neuroconstruct.genesis.GenesisFileManager

reset(Project, boolean) - Method in class ucl.physiol.neuroconstruct.mechanisms.XMLCellMechanism

Sets the xmlDoc to null and reinitialises

reset() - Method in class ucl.physiol.neuroconstruct.neuroml.NeuroMLFileManager

reset() - Method in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

reset() - Method in class ucl.physiol.neuroconstruct.project.GeneratedCellPositions

reset() - Method in class ucl.physiol.neuroconstruct.project.GeneratedElecInputs

reset() - Method in class ucl.physiol.neuroconstruct.project.GeneratedNetworkConnections

reset() - Method in class ucl.physiol.neuroconstruct.project.GeneratedPlotSaves

reset() - Method in class ucl.physiol.neuroconstruct.project.packing.CellPackingAdapter

Resets to zero internally computed positions

reset() - Method in class ucl.physiol.neuroconstruct.project.packing.CubicClosePackedCellPackingAdapter

reset() - Method in class ucl.physiol.neuroconstruct.project.packing.HexagonalLayerPackingAdapter

reset() - Method in class ucl.physiol.neuroconstruct.project.packing.OneDimRegSpacingPackingAdapter

reset() - Method in class ucl.physiol.neuroconstruct.project.packing.SimpleRegularCellPackingAdapter

reset() - Method in class ucl.physiol.neuroconstruct.psics.PsicsFileManager

reset() - Method in class ucl.physiol.neuroconstruct.pynn.PynnFileManager

reset() - Method in class ucl.physiol.neuroconstruct.simulation.SimulationData

reset() - Method in class ucl.physiol.neuroconstruct.utils.SequenceGenerator

resetCellAppearance() - Method in class ucl.physiol.neuroconstruct.j3D.OneCell3D

resetColours() - Method in class ucl.physiol.neuroconstruct.psics.PsicsFileManager

resetGenerated() - Method in class ucl.physiol.neuroconstruct.project.Project

resistanceUnits - Static variable in class ucl.physiol.neuroconstruct.utils.units.UnitConverter

REV_POT - Static variable in class ucl.physiol.neuroconstruct.project.SimPlot

REV_POT_ATTR_V2 - Static variable in class ucl.physiol.neuroconstruct.neuroml.BiophysicsConstants

REV_POTENTIAL - Static variable in class ucl.physiol.neuroconstruct.mechanisms.Exp2SynMechanism

Deprecated.

REV_POTENTIAL - Static variable in class ucl.physiol.neuroconstruct.mechanisms.PassiveMembraneMechanism

REV_POTENTIAL - Static variable in class ucl.physiol.neuroconstruct.mechanisms.TabHHMechanism

Deprecated.

revPotSetByConcs() - Method in class ucl.physiol.neuroconstruct.cell.IonProperties

RND_STIM_FREQ_ATTR - Static variable in class ucl.physiol.neuroconstruct.neuroml.NetworkMLConstants

RND_STIM_MECH_ATTR - Static variable in class ucl.physiol.neuroconstruct.neuroml.NetworkMLConstants

RNDSPIKE_ELEMENT_ROOT - Static variable in class ucl.physiol.neuroconstruct.genesis.GenesisFileManager

ROOT_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.BiophysicsConstants

ROOT_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.ChannelMLConstants

ROOT_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.MorphMLConstants

ROOT_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.NetworkMLConstants

ROOT_ELEMENT - Static variable in class ucl.physiol.neuroconstruct.neuroml.NeuroMLConstants

ROOT_LEMS - Static variable in class ucl.physiol.neuroconstruct.neuroml.LemsConstants

round(float) - Static method in class ucl.physiol.neuroconstruct.cell.Segment

run() - Method in class ucl.physiol.neuroconstruct.hpc.utils.ProcessOutputCatcher

run() - Method in class ucl.physiol.neuroconstruct.nmodleditor.processes.ProcessOutputWatcher

run() - Method in class ucl.physiol.neuroconstruct.project.CellInitialiser

run() - Method in class ucl.physiol.neuroconstruct.project.CellPositionGenerator

run() - Method in class ucl.physiol.neuroconstruct.project.CompNodeGenerator

run() - Method in class ucl.physiol.neuroconstruct.project.ElecInputGenerator

run() - Method in class ucl.physiol.neuroconstruct.project.MorphBasedConnGenerator

run() - Method in class ucl.physiol.neuroconstruct.project.PlotSaveGenerator

run() - Method in class ucl.physiol.neuroconstruct.project.VolumeBasedConnGenerator

RUN_HOC - Static variable in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

Various options for running the generated code: Generate hoc

RUN_PYTHON_HDF5 - Static variable in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

Various options for running the generated code: Generate hoc/Python

RUN_PYTHON_XML - Static variable in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

Various options for running the generated code: Generate hoc/Python

RUN_VIA_CONDOR - Static variable in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager

Various options for running the generated code: Generate condor code (semi deprecated)

runCommand(String, String, int) - Static method in class ucl.physiol.neuroconstruct.hpc.utils.ProcessManager

runCommand(String, String, int, File) - Static method in class ucl.physiol.neuroconstruct.hpc.utils.ProcessManager

runCommand(String, ProcessFeedback, int) - Static method in class ucl.physiol.neuroconstruct.hpc.utils.ProcessManager

runCommand(String, ProcessFeedback, File, int) - Static method in class ucl.physiol.neuroconstruct.hpc.utils.ProcessManager

runFile(boolean, boolean, boolean, boolean) - Method in class ucl.physiol.neuroconstruct.psics.PsicsFileManager

runFile(boolean) - Method in class ucl.physiol.neuroconstruct.pynn.PynnFileManager

runGenesisFile() - Method in class ucl.physiol.neuroconstruct.genesis.GenesisFileManager

runNeuronFile(File) - Method in class ucl.physiol.neuroconstruct.neuron.NeuronFileManager