neuroConstruct

Packages

ucl.physiol.neuroconstruct.cell	A set of classes for handling cells in neuroConstruct
ucl.physiol.neuroconstruct.cell.compartmentalisation	This is a package for various compartmentalisations of morphologies, representing different projectections of individual cell sections/segments into more efficient or optimised forms for particular simulators (particularly GENESIS).
ucl.physiol.neuroconstruct.cell.converters	A set of classes for importing/exporting various morphology file formats
ucl.physiol.neuroconstruct.cell.examples	Some very basic prototype cells
ucl.physiol.neuroconstruct.cell.utils	Some utilities for handling Cells
ucl.physiol.neuroconstruct.dataset	DataSets can contain sets of (x,y) coordinates for graphing, etc.
ucl.physiol.neuroconstruct.genesis	Classes for generating scripts for GENESIS/MOOSE
ucl.physiol.neuroconstruct.gui	Graphical interface for neuroConstruct
ucl.physiol.neuroconstruct.gui.plotter	2D plotting functionality
ucl.physiol.neuroconstruct.gui.view2d	Viewing cell activity in 2D
ucl.physiol.neuroconstruct.hpc.condor	A set of classes for running simulations on Condor (obsolete)
ucl.physiol.neuroconstruct.hpc.mpi	A set of classes for distributing simulations via MPI (e.g.
ucl.physiol.neuroconstruct.hpc.utils	Helper classes for MPI
ucl.physiol.neuroconstruct.j3D	Support for Java3D visualisations
ucl.physiol.neuroconstruct.mechanisms	Classes for channel, synaptic and other (e.g.
ucl.physiol.neuroconstruct.neuroml	NeuroML support
ucl.physiol.neuroconstruct.neuroml.hdf5	NeuroML and HDF5 support
ucl.physiol.neuroconstruct.neuron	Classes for generating NEURON code
ucl.physiol.neuroconstruct.nmodleditor.processes	Classes for generating NEURON code
ucl.physiol.neuroconstruct.project	Core neuroConstruct project classes
ucl.physiol.neuroconstruct.project.cellchoice	Classes for choosing groups of cells
ucl.physiol.neuroconstruct.project.packing	Classes for packing cells in 3D
ucl.physiol.neuroconstruct.project.segmentchoice	Classes for choosing groups of segments in a cell
ucl.physiol.neuroconstruct.project.stimulation	Stimulation types
ucl.physiol.neuroconstruct.psics	Classes for generating PSICS code
ucl.physiol.neuroconstruct.pynn	Classes for generating PyNN code
ucl.physiol.neuroconstruct.simulation	General utilities
ucl.physiol.neuroconstruct.utils	Classes for generating NEURON code
ucl.physiol.neuroconstruct.utils.compartment	This package is useful when converting between sections of conical frustra and compartments (cylinders)
ucl.physiol.neuroconstruct.utils.equation	Basic expression parsing
ucl.physiol.neuroconstruct.utils.equation.functions	Function definitions
ucl.physiol.neuroconstruct.utils.python	Classes for generating Python code
ucl.physiol.neuroconstruct.utils.units	Classes for handling units
ucl.physiol.neuroconstruct.utils.xml	Utilities for generating XML Documents
ucl.physiol.neuroconstruct.website	Extra web pages to automatically generate from projects