Hierarchy For All Packages

Package Hierarchies:

ucl.physiol.neuroconstruct.cell, ucl.physiol.neuroconstruct.cell.compartmentalisation, ucl.physiol.neuroconstruct.cell.converters, ucl.physiol.neuroconstruct.cell.examples, ucl.physiol.neuroconstruct.cell.utils, ucl.physiol.neuroconstruct.dataset, ucl.physiol.neuroconstruct.genesis, ucl.physiol.neuroconstruct.gui, ucl.physiol.neuroconstruct.gui.plotter, ucl.physiol.neuroconstruct.gui.view2d, ucl.physiol.neuroconstruct.hpc.condor, ucl.physiol.neuroconstruct.hpc.mpi, ucl.physiol.neuroconstruct.hpc.utils, ucl.physiol.neuroconstruct.j3D, ucl.physiol.neuroconstruct.mechanisms, ucl.physiol.neuroconstruct.neuroml, ucl.physiol.neuroconstruct.neuroml.hdf5, ucl.physiol.neuroconstruct.neuron, ucl.physiol.neuroconstruct.nmodleditor.processes, ucl.physiol.neuroconstruct.project, ucl.physiol.neuroconstruct.project.cellchoice, ucl.physiol.neuroconstruct.project.packing, ucl.physiol.neuroconstruct.project.segmentchoice, ucl.physiol.neuroconstruct.project.stimulation, ucl.physiol.neuroconstruct.psics, ucl.physiol.neuroconstruct.pynn, ucl.physiol.neuroconstruct.simulation, ucl.physiol.neuroconstruct.utils, ucl.physiol.neuroconstruct.utils.compartment, ucl.physiol.neuroconstruct.utils.equation, ucl.physiol.neuroconstruct.utils.equation.functions, ucl.physiol.neuroconstruct.utils.python, ucl.physiol.neuroconstruct.utils.units, ucl.physiol.neuroconstruct.utils.xml, ucl.physiol.neuroconstruct.website

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
    • ucl.physiol.neuroconstruct.gui.AdapterEditor (implements java.awt.event.ActionListener, javax.swing.table.TableCellEditor)
    • ucl.physiol.neuroconstruct.gui.CellGroupColourEditor (implements java.awt.event.ActionListener, javax.swing.table.TableCellEditor)
    • ucl.physiol.neuroconstruct.gui.DropDownCellValuesEditor (implements javax.swing.table.TableCellEditor)
    • ucl.physiol.neuroconstruct.gui.DropDownObjectCellEditor (implements javax.swing.table.TableCellEditor)
    • ucl.physiol.neuroconstruct.gui.RegionColourEditor (implements java.awt.event.ActionListener, javax.swing.table.TableCellEditor)
    • ucl.physiol.neuroconstruct.gui.SynapticPropertiesEditor (implements java.awt.event.ActionListener, javax.swing.table.TableCellEditor)
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • ucl.physiol.neuroconstruct.project.ArbourConnectionsInfo
    • ucl.physiol.neuroconstruct.project.CellGroupsInfo
    • ucl.physiol.neuroconstruct.mechanisms.CellMechanismInfo
    • ucl.physiol.neuroconstruct.dataset.DataSetInfo
    • ucl.physiol.neuroconstruct.project.ElecInputInfo
    • ucl.physiol.neuroconstruct.project.RegionsInfo
    • ucl.physiol.neuroconstruct.project.SimpleNetworkConnectionsInfo
    • ucl.physiol.neuroconstruct.project.SimPlotInfo
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo (implements javax.swing.tree.TreeModel)
  • ucl.physiol.neuroconstruct.cell.ApPropSpeed (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.utils.equation.Argument (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.cell.AxonalConnRegion (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.utils.equation.BasicFunctions (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.project.BasicProjectInfo
  • ucl.physiol.neuroconstruct.neuroml.BiophysicsConstants
  • ucl.physiol.neuroconstruct.cell.Cell (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.cell.examples.ComplexCell
    • ucl.physiol.neuroconstruct.cell.examples.GolgiCell
    • ucl.physiol.neuroconstruct.cell.examples.GranuleCell
    • ucl.physiol.neuroconstruct.cell.examples.MossyFiber
    • ucl.physiol.neuroconstruct.cell.examples.OneSegment
    • ucl.physiol.neuroconstruct.cell.examples.PurkinjeCell
    • ucl.physiol.neuroconstruct.cell.examples.SimpleCell
  • ucl.physiol.neuroconstruct.project.cellchoice.CellChooser
    • ucl.physiol.neuroconstruct.project.cellchoice.AllCells
    • ucl.physiol.neuroconstruct.project.cellchoice.FixedNumberCells
    • ucl.physiol.neuroconstruct.project.cellchoice.IndividualCells
    • ucl.physiol.neuroconstruct.project.cellchoice.PercentageOfCells
    • ucl.physiol.neuroconstruct.project.cellchoice.RegionAssociatedCells
  • ucl.physiol.neuroconstruct.project.cellchoice.CellChooserHelper
  • ucl.physiol.neuroconstruct.project.CellManager
  • ucl.physiol.neuroconstruct.mechanisms.CellMechanism
    • ucl.physiol.neuroconstruct.mechanisms.AbstractedCellMechanism
      • ucl.physiol.neuroconstruct.mechanisms.DistMembraneMechanism
        • ucl.physiol.neuroconstruct.mechanisms.PassiveMembraneMechanism
        • ucl.physiol.neuroconstruct.mechanisms.TabHHMechanism
      • ucl.physiol.neuroconstruct.mechanisms.FileBasedMembraneMechanism
      • ucl.physiol.neuroconstruct.mechanisms.SynapticMechanism
        • ucl.physiol.neuroconstruct.mechanisms.Exp2SynMechanism
    • ucl.physiol.neuroconstruct.mechanisms.XMLCellMechanism
      • ucl.physiol.neuroconstruct.mechanisms.ChannelMLCellMechanism
      • ucl.physiol.neuroconstruct.mechanisms.NeuroML2Component
      • ucl.physiol.neuroconstruct.mechanisms.SBMLCellMechanism
  • ucl.physiol.neuroconstruct.mechanisms.CellMechanismHelper
  • ucl.physiol.neuroconstruct.mechanisms.CellMechanismPlot
  • ucl.physiol.neuroconstruct.mechanisms.CellMechanismPlotInfo
  • ucl.physiol.neuroconstruct.project.packing.CellPackingAdapter
    • ucl.physiol.neuroconstruct.project.packing.CubicClosePackedCellPackingAdapter
    • ucl.physiol.neuroconstruct.project.packing.HexagonalLayerPackingAdapter
    • ucl.physiol.neuroconstruct.project.packing.OneDimRegSpacingPackingAdapter
    • ucl.physiol.neuroconstruct.project.packing.RandomCellPackingAdapter
    • ucl.physiol.neuroconstruct.project.packing.SimpleRegularCellPackingAdapter
    • ucl.physiol.neuroconstruct.project.packing.SinglePositionedCellPackingAdapter
  • ucl.physiol.neuroconstruct.project.packing.CellPackingHelper
  • ucl.physiol.neuroconstruct.cell.utils.CellTopologyHelper
  • ucl.physiol.neuroconstruct.cell.utils.CellTopologyHelper.CachedSynLocInfo
  • ucl.physiol.neuroconstruct.cell.utils.CellTypeHelper
  • ucl.physiol.neuroconstruct.cell.ChannelMechanism (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.neuroml.ChannelMLConstants
  • ucl.physiol.neuroconstruct.mechanisms.ChannelMLHelper
  • ucl.physiol.neuroconstruct.utils.ClassLogger
  • ucl.physiol.neuroconstruct.gui.ClickProjectHelper
  • ucl.physiol.neuroconstruct.utils.ColourUtils
  • ucl.physiol.neuroconstruct.utils.ColourUtils.ColourRecord
  • ucl.physiol.neuroconstruct.cell.compartmentalisation.CompartmentalisationManager
  • ucl.physiol.neuroconstruct.utils.compartment.CompartmentHelper
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • ucl.physiol.neuroconstruct.gui.plotter.PlotCanvas
      • ucl.physiol.neuroconstruct.gui.view2d.ViewCanvas
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • ucl.physiol.neuroconstruct.gui.ClickLink
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • ucl.physiol.neuroconstruct.gui.ClickPanel
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • javax.swing.JFormattedTextField
              • ucl.physiol.neuroconstruct.gui.DoubleInputField
              • ucl.physiol.neuroconstruct.gui.IntegerInputField
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • ucl.physiol.neuroconstruct.simulation.SimulationTree (implements java.awt.event.ActionListener)
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • ucl.physiol.neuroconstruct.j3D.Base3DPanel
          • ucl.physiol.neuroconstruct.j3D.Main3DPanel (implements ucl.physiol.neuroconstruct.j3D.SimulationInterface)
          • ucl.physiol.neuroconstruct.j3D.OneCell3DPanel (implements ucl.physiol.neuroconstruct.j3D.UpdateOneCell)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • ucl.physiol.neuroconstruct.gui.CellChooserDialog
            • ucl.physiol.neuroconstruct.gui.CellGroupDialog
            • ucl.physiol.neuroconstruct.gui.CellMechanismEditor (implements java.awt.event.FocusListener)
            • ucl.physiol.neuroconstruct.gui.CellPackingPatternDialog
            • ucl.physiol.neuroconstruct.hpc.condor.CondorFrame_AboutBox (implements java.awt.event.ActionListener)
            • ucl.physiol.neuroconstruct.gui.EditGroupCellDensMechAssociations (implements javax.swing.event.ListSelectionListener)
            • ucl.physiol.neuroconstruct.gui.EditGroupsDialog (implements javax.swing.event.ListSelectionListener)
            • ucl.physiol.neuroconstruct.gui.EditGroupSynapseAssociations (implements javax.swing.event.ListSelectionListener)
            • ucl.physiol.neuroconstruct.gui.plotter.EditPointsDialog (implements java.awt.event.FocusListener, java.awt.event.KeyListener)
            • ucl.physiol.neuroconstruct.gui.HDF5ChooserDialog
            • ucl.physiol.neuroconstruct.gui.InformationDialog
            • ucl.physiol.neuroconstruct.gui.InputRequest
            • ucl.physiol.neuroconstruct.gui.MainFrame_AboutBox (implements java.awt.event.ActionListener)
            • ucl.physiol.neuroconstruct.hpc.mpi.MpiFrame_AboutBox (implements java.awt.event.ActionListener)
            • ucl.physiol.neuroconstruct.gui.NetworkConnectionDialog
            • ucl.physiol.neuroconstruct.gui.NeurolucidaImportOptions
            • ucl.physiol.neuroconstruct.gui.NeuronImportDialog
            • ucl.physiol.neuroconstruct.gui.NewCellTypeDialog
            • ucl.physiol.neuroconstruct.gui.NewProjectDialog
            • ucl.physiol.neuroconstruct.gui.NumberGeneratorDialog
            • ucl.physiol.neuroconstruct.gui.plotter.PlotEquationDialog
            • ucl.physiol.neuroconstruct.gui.RegionsInfoDialog (implements javax.swing.event.DocumentListener)
            • ucl.physiol.neuroconstruct.gui.SaveBeforeExitDialog
              • ucl.physiol.neuroconstruct.gui.SaveBeforeNewProject
            • ucl.physiol.neuroconstruct.gui.SequenceGeneratorDialog
            • ucl.physiol.neuroconstruct.gui.SimpleTextInput
            • ucl.physiol.neuroconstruct.gui.SimpleViewer
            • ucl.physiol.neuroconstruct.gui.SimPlotDialog
            • ucl.physiol.neuroconstruct.gui.SimulationBrowser
            • ucl.physiol.neuroconstruct.gui.StimDialog
            • ucl.physiol.neuroconstruct.gui.SwcImportOptions
            • ucl.physiol.neuroconstruct.gui.SynapticPropertiesDialog
            • ucl.physiol.neuroconstruct.gui.VolBasedConnDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • ucl.physiol.neuroconstruct.gui.ActivityMonitor
            • ucl.physiol.neuroconstruct.gui.ChannelMLEditor (implements javax.swing.event.HyperlinkListener)
            • ucl.physiol.neuroconstruct.hpc.condor.CondorFrame (implements ucl.physiol.neuroconstruct.hpc.utils.ProcessFeedback)
            • ucl.physiol.neuroconstruct.gui.DataSetManager (implements javax.swing.event.ListSelectionListener)
            • ucl.physiol.neuroconstruct.gui.FieldPotentialFrame
            • ucl.physiol.neuroconstruct.j3D.FullScreen3D
            • ucl.physiol.neuroconstruct.gui.HelpFrame (implements javax.swing.event.HyperlinkListener)
            • ucl.physiol.neuroconstruct.gui.MainFrame (implements ucl.physiol.neuroconstruct.project.GenerationReport, javax.swing.event.HyperlinkListener, ucl.physiol.neuroconstruct.project.ProjectEventListener)
            • ucl.physiol.neuroconstruct.hpc.mpi.MpiFrame (implements ucl.physiol.neuroconstruct.hpc.utils.ProcessFeedback)
            • ucl.physiol.neuroconstruct.gui.OptionsFrame
            • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame
            • ucl.physiol.neuroconstruct.gui.SegmentSelector (implements javax.swing.event.DocumentListener)
            • ucl.physiol.neuroconstruct.gui.SimConfigManager (implements javax.swing.event.DocumentListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener)
            • ucl.physiol.neuroconstruct.gui.SimulationRerunFrame
            • ucl.physiol.neuroconstruct.gui.SimulationTreeFrame
            • ucl.physiol.neuroconstruct.gui.SlicerFrame
            • ucl.physiol.neuroconstruct.gui.view2d.View2DPlane
              • ucl.physiol.neuroconstruct.gui.view2d.ViewSynchro2D
              • ucl.physiol.neuroconstruct.gui.view2d.ViewVoltage2D (implements ucl.physiol.neuroconstruct.project.VoltageEventListener)
  • ucl.physiol.neuroconstruct.hpc.condor.CondorApp
  • ucl.physiol.neuroconstruct.project.ConnectivityConditions
  • ucl.physiol.neuroconstruct.project.ConnSpecificProps
  • ucl.physiol.neuroconstruct.utils.CoordCalculator
  • ucl.physiol.neuroconstruct.dataset.DataSet
  • ucl.physiol.neuroconstruct.simulation.DataStore
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo.AllSimRoot
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo.CellGroupNode
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo.CellNode
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo.DataStoreNode
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo.SimNode
  • ucl.physiol.neuroconstruct.utils.Display3DProperties
  • ucl.physiol.neuroconstruct.project.stimulation.ElectricalInput
    • ucl.physiol.neuroconstruct.project.stimulation.IClamp
    • ucl.physiol.neuroconstruct.project.stimulation.IClampVariable
    • ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrain
    • ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainExt
    • ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainVariable
  • ucl.physiol.neuroconstruct.utils.equation.Equation
  • ucl.physiol.neuroconstruct.utils.equation.EquationUnit (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.utils.equation.BinaryOperation
    • ucl.physiol.neuroconstruct.utils.equation.Constant
    • ucl.physiol.neuroconstruct.utils.equation.FunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.CosFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.ExpFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.HeavisideStepFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.LnFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.LogFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.RandomFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.SineFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.SqrtFunctionUnit
      • ucl.physiol.neuroconstruct.utils.equation.functions.TanFunctionUnit
    • ucl.physiol.neuroconstruct.utils.equation.Variable
  • ucl.physiol.neuroconstruct.website.ExampleProjects
  • ucl.physiol.neuroconstruct.project.Expand
  • ucl.physiol.neuroconstruct.utils.equation.Expression
  • javax.swing.filechooser.FileFilter
    • ucl.physiol.neuroconstruct.gui.SimpleFileFilter (implements java.io.FileFilter)
  • ucl.physiol.neuroconstruct.cell.converters.FormatImporter
    • ucl.physiol.neuroconstruct.cell.converters.GenesisMorphReader
    • ucl.physiol.neuroconstruct.cell.converters.MorphMLConverter
    • ucl.physiol.neuroconstruct.cell.converters.NeurolucidaReader
    • ucl.physiol.neuroconstruct.cell.converters.NeuronMorphReader
    • ucl.physiol.neuroconstruct.cell.converters.SWCMorphReader
  • ucl.physiol.neuroconstruct.project.GapOption
    • ucl.physiol.neuroconstruct.project.GapOption.DelayedJump
    • ucl.physiol.neuroconstruct.project.GapOption.InstantaneousJump
  • ucl.physiol.neuroconstruct.project.GeneralProperties
  • ucl.physiol.neuroconstruct.utils.GeneralUtils
  • ucl.physiol.neuroconstruct.project.GeneratedCellPositions
  • ucl.physiol.neuroconstruct.project.GeneratedCellPositions.CachedCellPosition
  • ucl.physiol.neuroconstruct.project.GeneratedElecInputs
  • ucl.physiol.neuroconstruct.project.GeneratedNetworkConnections
  • ucl.physiol.neuroconstruct.project.GeneratedNetworkConnections.SingleSynapticConnection
  • ucl.physiol.neuroconstruct.project.GeneratedPlotSaves
  • ucl.physiol.neuroconstruct.project.GeneratedPlotSaves.PlotSaveDetails
  • ucl.physiol.neuroconstruct.genesis.GenesisFileManager
  • ucl.physiol.neuroconstruct.genesis.GenesisFileManager.VariableHelper
  • ucl.physiol.neuroconstruct.genesis.GenesisMorphologyGenerator
  • ucl.physiol.neuroconstruct.genesis.GenesisSettings
  • ucl.physiol.neuroconstruct.project.GrowMode
  • ucl.physiol.neuroconstruct.utils.GuiUtils
  • ucl.physiol.neuroconstruct.neuroml.hdf5.Hdf5Constants
  • ucl.physiol.neuroconstruct.neuroml.hdf5.Hdf5Utils
  • ucl.physiol.neuroconstruct.project.IgorNeuroMatic
  • ucl.physiol.neuroconstruct.project.stimulation.InputInstanceProps
    • ucl.physiol.neuroconstruct.project.stimulation.IClampInstanceProps
    • ucl.physiol.neuroconstruct.project.stimulation.IClampVariableInstanceProps
    • ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainExtInstanceProps
    • ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainInstanceProps
    • ucl.physiol.neuroconstruct.project.stimulation.RandomSpikeTrainVarInstanceProps
  • ucl.physiol.neuroconstruct.gui.InputRequestElement
  • ucl.physiol.neuroconstruct.project.InternalParameter (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.project.InternalPhysicalParameter
    • ucl.physiol.neuroconstruct.project.InternalStringFloatParameter
  • ucl.physiol.neuroconstruct.cell.IonProperties (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.hpc.mpi.KnownHost
  • ucl.physiol.neuroconstruct.neuroml.LemsConstants
  • ucl.physiol.neuroconstruct.utils.Logger
  • ucl.physiol.neuroconstruct.gui.MainApplication
  • ucl.physiol.neuroconstruct.project.MatlabOctave
  • ucl.physiol.neuroconstruct.project.MaxMinLength
  • ucl.physiol.neuroconstruct.mechanisms.MechanismImplementation
  • ucl.physiol.neuroconstruct.cell.MechParameter (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.neuroml.MetadataConstants
  • javax.swing.plaf.metal.MetalTheme
    • javax.swing.plaf.metal.DefaultMetalTheme
      • javax.swing.plaf.metal.OceanTheme
        • ucl.physiol.neuroconstruct.gui.CustomLookAndFeel
  • ucl.physiol.neuroconstruct.cell.compartmentalisation.MorphCompartmentalisation
    • ucl.physiol.neuroconstruct.cell.compartmentalisation.GenesisCompartmentalisation
    • ucl.physiol.neuroconstruct.cell.compartmentalisation.OriginalCompartmentalisation
    • ucl.physiol.neuroconstruct.cell.compartmentalisation.SimpleCompartmentalisation
  • ucl.physiol.neuroconstruct.neuroml.MorphMLConstants
  • ucl.physiol.neuroconstruct.project.MorphologyFileUpdate
  • ucl.physiol.neuroconstruct.hpc.mpi.MpiApp
  • ucl.physiol.neuroconstruct.hpc.mpi.MpiConfiguration
  • ucl.physiol.neuroconstruct.hpc.mpi.MpiHost
  • ucl.physiol.neuroconstruct.hpc.mpi.MpiSettings
  • ucl.physiol.neuroconstruct.project.MultiRunManager
  • ucl.physiol.neuroconstruct.project.MultiRunManager.ParameterRange
  • ucl.physiol.neuroconstruct.neuron.NativeCodeLocation
  • ucl.physiol.neuroconstruct.neuroml.NetworkMLConstants
  • ucl.physiol.neuroconstruct.neuroml.hdf5.NetworkMLReader (implements ucl.physiol.neuroconstruct.neuroml.NetworkMLnCInfo)
  • ucl.physiol.neuroconstruct.neuroml.hdf5.NetworkMLWriter
  • ucl.physiol.neuroconstruct.neuroml.NeuroMLConstants
  • ucl.physiol.neuroconstruct.neuroml.NeuroMLFileManager
  • ucl.physiol.neuroconstruct.neuron.NeuronFileConverter
  • ucl.physiol.neuroconstruct.neuron.NeuronFileConverter.ForLoop
  • ucl.physiol.neuroconstruct.neuron.NeuronFileConverter.Procedure
  • ucl.physiol.neuroconstruct.neuron.NeuronFileManager
  • ucl.physiol.neuroconstruct.neuron.NeuronSettings
  • ucl.physiol.neuroconstruct.neuron.NeuronTemplateGenerator
  • ucl.physiol.neuroconstruct.utils.NumberGenerator (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.utils.WeightGenerator
  • ucl.physiol.neuroconstruct.genesis.NumericalMethod
  • ucl.physiol.neuroconstruct.j3D.OneCell3D
  • ucl.physiol.neuroconstruct.cell.ParameterisedGroup (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.utils.units.PhysicalQuantity
  • ucl.physiol.neuroconstruct.gui.plotter.PlotManager
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterApp
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.ApAnalysisMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetAbsAreaMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetAreaMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetAutocorrMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetColourMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetDetachMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetDistHistMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetEditPointsMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetExportMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetFormatMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetInfoMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetISIHistMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetListPointsMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetMoveMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetPeaksMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetPhasePlanePlotMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetQuickStatsMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetRemoveMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetSaveInProjMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetSimpDerivMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetSpikeMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetSyncIndexMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetTransformListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.gui.plotter.PlotterFrame.DataSetZerosMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.project.PositionedCell
  • ucl.physiol.neuroconstruct.project.PositionRecord
  • ucl.physiol.neuroconstruct.project.PostSynapticObject
  • ucl.physiol.neuroconstruct.utils.units.Prefix
  • ucl.physiol.neuroconstruct.project.PrePostAllowedLocs
  • ucl.physiol.neuroconstruct.hpc.utils.ProcessManager
  • ucl.physiol.neuroconstruct.nmodleditor.processes.ProcessManager
  • ucl.physiol.neuroconstruct.project.Project (implements javax.swing.event.TableModelListener)
  • ucl.physiol.neuroconstruct.project.ProjectFileUpdate
  • ucl.physiol.neuroconstruct.project.ProjectManager (implements ucl.physiol.neuroconstruct.project.GenerationReport)
  • ucl.physiol.neuroconstruct.project.ProjectProperties
  • ucl.physiol.neuroconstruct.project.ProjectStructure
  • ucl.physiol.neuroconstruct.psics.PsicsFileManager
  • ucl.physiol.neuroconstruct.psics.PsicsMorphologyGenerator
  • ucl.physiol.neuroconstruct.psics.PsicsSettings
  • ucl.physiol.neuroconstruct.pynn.PynnFileManager
  • ucl.physiol.neuroconstruct.utils.python.PythonUtils
  • ucl.physiol.neuroconstruct.hpc.mpi.QueueInfo
  • ucl.physiol.neuroconstruct.gui.plotter.RasterOptions
  • ucl.physiol.neuroconstruct.utils.RecentFiles
  • ucl.physiol.neuroconstruct.project.Region (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.project.ConicalRegion
    • ucl.physiol.neuroconstruct.project.CylindricalRegion
    • ucl.physiol.neuroconstruct.project.RectangularBox
    • ucl.physiol.neuroconstruct.project.SphericalRegion
  • ucl.physiol.neuroconstruct.project.RegionTypeHelper
  • ucl.physiol.neuroconstruct.utils.equation.RelationalOperator
  • ucl.physiol.neuroconstruct.hpc.mpi.RemoteLogin
  • ucl.physiol.neuroconstruct.utils.ReplaySettings
  • javax.media.j3d.SceneGraphObject
    • javax.media.j3d.Node
      • javax.media.j3d.Group
        • com.sun.j3d.utils.geometry.Primitive
          • ucl.physiol.neuroconstruct.j3D.ConicalFrustum
      • javax.media.j3d.Leaf
        • javax.media.j3d.Behavior
          • com.sun.j3d.utils.picking.behaviors.PickMouseBehavior
            • ucl.physiol.neuroconstruct.j3D.SectionPicker
  • ucl.physiol.neuroconstruct.genesis.ScriptLocation
  • ucl.physiol.neuroconstruct.project.SearchPattern
  • ucl.physiol.neuroconstruct.cell.Section (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.cell.Segment (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.cell.SegmentLocation (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.cell.PostSynapticTerminalLocation
    • ucl.physiol.neuroconstruct.cell.PreSynapticTerminalLocation
  • ucl.physiol.neuroconstruct.project.segmentchoice.SegmentLocationChooser
    • ucl.physiol.neuroconstruct.project.segmentchoice.GroupDistributedSegments
    • ucl.physiol.neuroconstruct.project.segmentchoice.IndividualSegments
  • ucl.physiol.neuroconstruct.cell.compartmentalisation.SegmentLocMapper
  • ucl.physiol.neuroconstruct.cell.compartmentalisation.SegmentRange
  • ucl.physiol.neuroconstruct.utils.SequenceGenerator
  • ucl.physiol.neuroconstruct.project.SimConfig
  • ucl.physiol.neuroconstruct.project.SimConfigInfo
  • ucl.physiol.neuroconstruct.simulation.SimEnvHelper
  • ucl.physiol.neuroconstruct.utils.compartment.SimpleCompartment
  • ucl.physiol.neuroconstruct.utils.SimpleHtmlDoc
  • ucl.physiol.neuroconstruct.utils.SimpleHtmlDoc.SimpleHtmlElement
    • ucl.physiol.neuroconstruct.utils.SimpleHtmlDoc.LinkedElement
  • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLEntity
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLAttribute
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLComment
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLContent
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLDocument
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLElement
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLNamespace
  • ucl.physiol.neuroconstruct.project.SimPlot
  • ucl.physiol.neuroconstruct.gui.SimulationBrowser.PropertiesMenuListener (implements java.awt.event.ActionListener)
  • ucl.physiol.neuroconstruct.simulation.SimulationData
  • ucl.physiol.neuroconstruct.simulation.SimulationParameters
  • ucl.physiol.neuroconstruct.mechanisms.SimulatorMapping
  • ucl.physiol.neuroconstruct.project.SingleElectricalInput
  • ucl.physiol.neuroconstruct.cell.Species (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.simulation.SpikeAnalyser
  • ucl.physiol.neuroconstruct.gui.plotter.SpikeAnalysisOptions
  • ucl.physiol.neuroconstruct.simulation.StimulationSettings
    • ucl.physiol.neuroconstruct.simulation.IClampSettings
    • ucl.physiol.neuroconstruct.simulation.IClampVariableSettings
    • ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainExtSettings
    • ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainSettings
    • ucl.physiol.neuroconstruct.simulation.RandomSpikeTrainVariableSettings
  • ucl.physiol.neuroconstruct.cell.SynapticConnectionEndPoint
  • ucl.physiol.neuroconstruct.project.SynapticProperties
  • java.lang.Thread (implements java.lang.Runnable)
    • ucl.physiol.neuroconstruct.project.CellInitialiser
    • ucl.physiol.neuroconstruct.project.CellPositionGenerator
    • ucl.physiol.neuroconstruct.project.CompNodeGenerator
    • ucl.physiol.neuroconstruct.project.ElecInputGenerator
    • ucl.physiol.neuroconstruct.project.MorphBasedConnGenerator
    • ucl.physiol.neuroconstruct.project.PlotSaveGenerator
    • ucl.physiol.neuroconstruct.hpc.utils.ProcessOutputCatcher
    • ucl.physiol.neuroconstruct.nmodleditor.processes.ProcessOutputWatcher
    • ucl.physiol.neuroconstruct.project.VolumeBasedConnGenerator
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • ucl.physiol.neuroconstruct.project.cellchoice.AllCellsChosenException
      • ucl.physiol.neuroconstruct.project.segmentchoice.AllSegmentsChosenException
      • ucl.physiol.neuroconstruct.project.cellchoice.CellChooserException
      • ucl.physiol.neuroconstruct.project.CellCreationException
      • ucl.physiol.neuroconstruct.mechanisms.CellMechanismException
        • ucl.physiol.neuroconstruct.mechanisms.XMLMechanismException
          • ucl.physiol.neuroconstruct.mechanisms.ChannelMLException
            • ucl.physiol.neuroconstruct.mechanisms.CMLMechNotInitException
          • ucl.physiol.neuroconstruct.mechanisms.SBMLException
      • ucl.physiol.neuroconstruct.project.packing.CellPackingException
      • ucl.physiol.neuroconstruct.dataset.DataSetException
      • ucl.physiol.neuroconstruct.utils.equation.EquationException
      • ucl.physiol.neuroconstruct.genesis.GenesisException
      • ucl.physiol.neuroconstruct.neuroml.hdf5.Hdf5Exception
      • ucl.physiol.neuroconstruct.cell.converters.MorphologyException
      • ucl.physiol.neuroconstruct.project.NamingException
      • ucl.physiol.neuroconstruct.neuroml.NeuroMLException
      • ucl.physiol.neuroconstruct.neuron.NeuronException
      • ucl.physiol.neuroconstruct.project.NoProjectLoadedException
      • ucl.physiol.neuroconstruct.cell.ParameterException
      • ucl.physiol.neuroconstruct.project.ProjectFileParsingException
      • ucl.physiol.neuroconstruct.psics.PsicsException
      • ucl.physiol.neuroconstruct.pynn.PynnException
      • ucl.physiol.neuroconstruct.project.segmentchoice.SegmentChooserException
      • ucl.physiol.neuroconstruct.utils.SequenceGenerator.EndOfSequenceException
      • ucl.physiol.neuroconstruct.simulation.SimulationDataException
      • ucl.physiol.neuroconstruct.utils.units.UnitsException
      • ucl.physiol.neuroconstruct.gui.plotter.ValueNotPresentException
  • ucl.physiol.neuroconstruct.utils.ToolTipHelper
  • ucl.physiol.neuroconstruct.gui.UncaughtExceptionInfo (implements java.lang.Thread.UncaughtExceptionHandler)
  • ucl.physiol.neuroconstruct.utils.units.Unit
  • ucl.physiol.neuroconstruct.utils.units.UnitConverter
  • ucl.physiol.neuroconstruct.utils.units.Units
  • ucl.physiol.neuroconstruct.utils.UserSettings
  • ucl.physiol.neuroconstruct.j3D.Utils3D
  • ucl.physiol.neuroconstruct.gui.ValidityStatus
  • ucl.physiol.neuroconstruct.cell.VariableMechanism (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.cell.VariableParameter (implements java.io.Serializable)
  • ucl.physiol.neuroconstruct.gui.view2d.View2DPlane.ViewingDirection
  • ucl.physiol.neuroconstruct.gui.view2d.ViewCanvas.CellPaintInfo
  • java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
    • ucl.physiol.neuroconstruct.j3D.Main3DPanel.AppCloser
    • ucl.physiol.neuroconstruct.j3D.OneCell3DPanel.AppCloser
  • org.xml.sax.helpers.XMLFilterImpl (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler, org.xml.sax.XMLFilter)
    • ucl.physiol.neuroconstruct.cell.converters.MorphMLReader
    • ucl.physiol.neuroconstruct.neuroml.NetworkMLReader (implements ucl.physiol.neuroconstruct.neuroml.NetworkMLnCInfo)
    • ucl.physiol.neuroconstruct.utils.xml.SimpleXMLReader (implements org.xml.sax.ext.LexicalHandler)
  • ucl.physiol.neuroconstruct.utils.XMLUtils
  • ucl.physiol.neuroconstruct.utils.ZipUtils

Interface Hierarchy

• java.util.EventListener
  • ucl.physiol.neuroconstruct.project.ProjectEventListener
  • ucl.physiol.neuroconstruct.project.ProjectEventListner
  • ucl.physiol.neuroconstruct.project.VoltageEventListener
• ucl.physiol.neuroconstruct.project.GenerationReport
• ucl.physiol.neuroconstruct.neuroml.NetworkMLnCInfo
• ucl.physiol.neuroconstruct.hpc.utils.ProcessFeedback
• ucl.physiol.neuroconstruct.j3D.SimulationInterface
• ucl.physiol.neuroconstruct.j3D.UpdateOneCell

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • ucl.physiol.neuroconstruct.cell.ParameterisedGroup.Metric (implements java.io.Serializable)
    • ucl.physiol.neuroconstruct.cell.ParameterisedGroup.ProximalPref
    • ucl.physiol.neuroconstruct.cell.ParameterisedGroup.DistalPref
    • ucl.physiol.neuroconstruct.cell.converters.NeurolucidaReader.ASC_State
    • ucl.physiol.neuroconstruct.cell.converters.NeurolucidaReader.ASCLine_State
    • ucl.physiol.neuroconstruct.genesis.GenesisSettings.GraphicsMode
    • ucl.physiol.neuroconstruct.gui.MainApplication.StartupMode
    • ucl.physiol.neuroconstruct.gui.DataSetManager.DataReadFormat
    • ucl.physiol.neuroconstruct.hpc.mpi.QueueInfo.QueueType
    • ucl.physiol.neuroconstruct.hpc.mpi.MpiSettings.KnownSimulators
    • ucl.physiol.neuroconstruct.neuroml.NeuroMLConstants.NeuroMLLevel
    • ucl.physiol.neuroconstruct.neuroml.NeuroMLConstants.NeuroMLVersion
    • ucl.physiol.neuroconstruct.neuroml.LemsConstants.LemsOption
    • ucl.physiol.neuroconstruct.neuron.NeuronSettings.GraphicsMode
    • ucl.physiol.neuroconstruct.neuron.NeuronSettings.DataSaveFormat
    • ucl.physiol.neuroconstruct.pynn.PynnFileManager.PynnSimulator
    • ucl.physiol.neuroconstruct.simulation.SimulationsInfo.ListStyle