Serialized Form
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Package ucl.physiol.neuroconstruct.cell |
serialVersionUID: -1837538506739L
speed
float speed
serialVersionUID: -1837545937744L
name
String name
region
Region region
serialVersionUID: -1542517048619766744L
cellDescription
String cellDescription
- A short description of the cell type...
instanceName
String instanceName
- reference to the particular instance
allSegments
Vector<E> allSegments
- A vector containing the segments for the soma/dends/axons
synapsesVsGroups
Hashtable<K,V> synapsesVsGroups
- For the recording of Synapse potential locations
chanMechsVsGroups
Hashtable<K,V> chanMechsVsGroups
- For the locations of ChannelMechanisms
speciesVsGroups
Hashtable<K,V> speciesVsGroups
- For the locations of "species", though usually only used for ions, e.g. na, k, ca
varMechsVsParaGroups
Hashtable<K,V> varMechsVsParaGroups
- For the recording of ChannelMechanisms types
apPropSpeedsVsGroups
Hashtable<K,V> apPropSpeedsVsGroups
- For the recording of AP propagation delays. Note: unlike the chanMechsVsGroups and synapsesVsGroups
there can only be one ap prop speed assiciated with each group. The ApPropSpeed vs Array of groups storage
method is still used so it will work easily in the EditGroupChanMechAssociations dialog
ionPropsVsGroups
Hashtable<K,V> ionPropsVsGroups
axonalArbours
Vector<E> axonalArbours
- Fos the second connection method, specify the region in space, relative to the coordinate
system of the cell, where axonal connections can be made
defaultInitPot
float defaultInitPot
initialPotential
NumberGenerator initialPotential
- Value for the initial membrane potential for the cell
parameterisedGroups
Vector<E> parameterisedGroups
specAxResVsGroups
Hashtable<K,V> specAxResVsGroups
- For the specific axial resistance of the cell
tempGlobalSpecAxRes
NumberGenerator tempGlobalSpecAxRes
- Needed to deal with previous handling of spec ax res, when there was just a global value for the cell
specCapVsGroups
Hashtable<K,V> specCapVsGroups
- For the specific capacitance of the cell
tempGlobalSpecCapacitance
NumberGenerator tempGlobalSpecCapacitance
- Needed to deal with previous handling of spec cap, when there was just a global value for the cell
serialVersionUID: -1884757566565532L
name
String name
density
float density
extraParameters
ArrayList<E> extraParameters
serialVersionUID: -63945762534849L
name
String name
reversalPotential
float reversalPotential
internalConcentration
float internalConcentration
externalConcentration
float externalConcentration
serialVersionUID: -6656553218847575L
name
String name
value
float value
serialVersionUID: -378992774734322L
name
String name
group
String group
metric
ParameterisedGroup.Metric metric
proximalPref
ParameterisedGroup.ProximalPref proximalPref
distalPref
ParameterisedGroup.DistalPref distalPref
variable
String variable
cachedMinLen
float cachedMinLen
cachedMaxLen
float cachedMaxLen
cacheTime
long cacheTime
maxCacheTime
float maxCacheTime
serialVersionUID: 3982459846602131261L
sectionName
String sectionName
- String uniquely identifying the section
startPointPosition
Point3f startPointPosition
- Start point for section (and for first segment)
startRadius
float startRadius
- Starting radius for section (and for first segment)
groups
Vector<E> groups
- Groups to which ALL segments in this section belong
numberInternalDivisions
int numberInternalDivisions
- This corresponds to nseg in NEURON
comment
String comment
- Added so that if anything funny happens in import, a comment can be added
to explain what's going on. No functional relevance, but can be printed in Cell Info
and included with MorphML export
serialVersionUID: 6877533563271791697L
segmentName
String segmentName
- Name given to Segment, unique within a cell
parentSegment
Segment parentSegment
- Reference to parent Segment
segmentId
int segmentId
- Unique (for this Cell) Id for the Segment. They should all be >=0 and ideally ascending
This is given a funny initial value to ensure the actual value is written to the
XML file generated by XMLEncoder
fractionAlongParent
float fractionAlongParent
- Fraction along parent *Segment*, NOT fraction along parent section, as a statement like
'soma connect dend1[0] (0), 0.5' in NEURON would mean
section
Section section
- Section to which this Segment belongs
finiteVolume
boolean finiteVolume
- Whether the volume of this segment should be taken into account for packing...
comment
String comment
- Added so that if anything funny happens in import, a comment can be added
to explain what's going on. No functional relevance, but can be printed in Cell Info
and included with MorphML export
endPointPosition
Point3f endPointPosition
radius
float radius
- Radius of the end point of the Segment.
This is given a funny initial value to ensure the actual value is written to the
XML file generated by XMLEncoder
serialVersionUID: 376736284031155L
segmentId
int segmentId
fractAlong
float fractAlong
- Between 0 and 1
serialVersionUID: -27530166332L
name
String name
props
Properties props
serialVersionUID: -7566565188475532L
name
String name
param
VariableParameter param
serialVersionUID: -1345234188475532L
name
String name
expression
EquationUnit expression
expressionArgs
ArrayList<E> expressionArgs
parameterisation
Variable parameterisation
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Package ucl.physiol.neuroconstruct.cell.converters |
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Package ucl.physiol.neuroconstruct.cell.examples |
somaStartSection
Segment somaStartSection
somaFinishSection
Segment somaFinishSection
somaSection
Segment somaSection
axonSynGroup
String axonSynGroup
dendSynGroup
String dendSynGroup
somaSegment
Segment somaSegment
somaSection
Segment somaSection
somaSection
Segment somaSection
somaSection
Segment somaSection
somaSection
Segment somaSection
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Package ucl.physiol.neuroconstruct.dataset |
logger
ClassLogger logger
formatter
SimpleDateFormat formatter
allColumns
Vector<E> allColumns
dataSetObjs
Vector<E> dataSetObjs
dataSetDir
File dataSetDir
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Package ucl.physiol.neuroconstruct.genesis |
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Package ucl.physiol.neuroconstruct.gui |
logger
ClassLogger logger
maximum
int maximum
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelShow
JPanel jPanelShow
jButtonClose
JButton jButtonClose
borderLayout1
BorderLayout borderLayout1
jProgressBar1
JProgressBar jProgressBar1
jLabelNumPercentage
JLabel jLabelNumPercentage
jPanel1
JPanel jPanel1
jPanel2
JPanel jPanel2
jLabelPercentage
JLabel jLabelPercentage
jLabelNumActiveCells
JLabel jLabelNumActiveCells
jLabelActive
JLabel jLabelActive
jLabelNumNumCells
JLabel jLabelNumNumCells
jLabelNum
JLabel jLabelNum
borderLayout2
BorderLayout borderLayout2
gridLayout1
GridLayout gridLayout1
border1
Border border1
jPanel3
JPanel jPanel3
jLabelCellGroup
JLabel jLabelCellGroup
logger
ClassLogger logger
button
JButton button
myAdapter
CellPackingAdapter myAdapter
myParent
Frame myParent
paramInfo
Hashtable<K,V> paramInfo
cancelled
boolean cancelled
jPanelButtons
JPanel jPanelButtons
jPanelMain
JPanel jPanelMain
borderLayout1
BorderLayout borderLayout1
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelCombo
JPanel jPanelCombo
jLabelMain
JLabel jLabelMain
jComboBoxCellChoosers
JComboBox jComboBoxCellChoosers
jPanelDescription
JPanel jPanelDescription
jTextAreaDescription
JTextArea jTextAreaDescription
jLabelParams
JLabel jLabelParams
borderLayout2
BorderLayout borderLayout2
jPanelParameters
JPanel jPanelParameters
borderLayout3
BorderLayout borderLayout3
border1
Border border1
gridLayoutParameters
GridLayout gridLayoutParameters
currentColour
Color currentColour
button
JButton button
colourChooser
JColorChooser colourChooser
dialog
JDialog dialog
logger
ClassLogger logger
editingExisting
boolean editingExisting
cellGroupName
String cellGroupName
toolTipText
ToolTipHelper toolTipText
chosenAdapter
CellPackingAdapter chosenAdapter
project
Project project
cancelled
boolean cancelled
panel1
JPanel panel1
jLabelCellGroupName
JLabel jLabelCellGroupName
jTextFieldCellGroupName
JTextField jTextFieldCellGroupName
jLabelCellType
JLabel jLabelCellType
gridBagLayout1
GridBagLayout gridBagLayout1
jPanelLabel
JPanel jPanelLabel
jPanel2
JPanel jPanel2
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
borderLayout1
BorderLayout borderLayout1
jLabelMain
JLabel jLabelMain
jComboBoxCellType
JComboBox jComboBoxCellType
jLabelRegionName
JLabel jLabelRegionName
jComboBoxRegionName
JComboBox jComboBoxRegionName
jLabelColour
JLabel jLabelColour
jButtonColour
JButton jButtonColour
jLabelPackingPattern
JLabel jLabelPackingPattern
jLabelPriority
JLabel jLabelPriority
jTextFieldPriority
JTextField jTextFieldPriority
jButtonPackPattern
JButton jButtonPackPattern
adapterString
JTextField adapterString
logger
ClassLogger logger
cancelled
boolean cancelled
textFieldsForParameters
Hashtable<K,V> textFieldsForParameters
firstLineCombo
String firstLineCombo
currentCellMechanism
AbstractedCellMechanism currentCellMechanism
defaultNameNewProc
String defaultNameNewProc
project
Project project
parent
Frame parent
choosePlot
String choosePlot
recentFiles
RecentFiles recentFiles
jPanelMain
JPanel jPanelMain
jButtonOK
JButton jButtonOK
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jPanelLabel
JPanel jPanelLabel
jLabelMain
JLabel jLabelMain
jTextFieldName
JTextField jTextFieldName
jPanelSelectType
JPanel jPanelSelectType
borderLayout1
BorderLayout borderLayout1
jPanelName
JPanel jPanelName
jLabelType
JLabel jLabelType
jComboBoxModel
JComboBox jComboBoxModel
jPanelParameters
JPanel jPanelParameters
jPanelDescription
JPanel jPanelDescription
jTextAreaDescription
JTextArea jTextAreaDescription
border1
Border border1
borderLayout2
BorderLayout borderLayout2
jTextFieldSimEnvs
JTextField jTextFieldSimEnvs
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelSimEnvs
JLabel jLabelSimEnvs
jTabbedPaneCellMechInfo
JTabbedPane jTabbedPaneCellMechInfo
border2
Border border2
jButtonPlotsFile
JButton jButtonPlotsFile
jPanelMoreInfo
JPanel jPanelMoreInfo
jLabelMoreInfo
JLabel jLabelMoreInfo
jPanelOKCancel
JPanel jPanelOKCancel
borderLayout3
BorderLayout borderLayout3
logger
ClassLogger logger
paramInfo
Hashtable<K,V> paramInfo
cancelled
boolean cancelled
jPanelButtons
JPanel jPanelButtons
jPanelMain
JPanel jPanelMain
borderLayout1
BorderLayout borderLayout1
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelCombo
JPanel jPanelCombo
jLabelMain
JLabel jLabelMain
jComboBoxPatterns
JComboBox jComboBoxPatterns
jPanelDescription
JPanel jPanelDescription
jTextAreaDescription
JTextArea jTextAreaDescription
jLabelParams
JLabel jLabelParams
borderLayout2
BorderLayout borderLayout2
jPanelParameters
JPanel jPanelParameters
borderLayout3
BorderLayout borderLayout3
border1
Border border1
gridLayoutParameters
GridLayout gridLayoutParameters
project
Project project
xmlMechanism
XMLCellMechanism xmlMechanism
xmlDialect
String xmlDialect
SUMMARY_TAB
String SUMMARY_TAB
EDIT_TAB
String EDIT_TAB
CML_CONTENTS_TAB
String CML_CONTENTS_TAB
refreshingInterface
boolean refreshingInterface
- To avoid events when refreshing interface
jTextAreaMain
JTextArea jTextAreaMain
jPanelMain
JPanel jPanelMain
jTabbedPane1
JTabbedPane jTabbedPane1
jPanelCMLFile
JPanel jPanelCMLFile
jPanelCMLSummary
JPanel jPanelCMLSummary
jPanel3
JPanel jPanel3
borderLayout1
BorderLayout borderLayout1
jButtonCancel
JButton jButtonCancel
jButtonReload
JButton jButtonReload
jButtonPlot
JButton jButtonPlot
jButtonEditExt
JButton jButtonEditExt
jButtonEditProps
JButton jButtonEditProps
jPanelTop
JPanel jPanelTop
jPanelMid
JPanel jPanelMid
jPanelBot
JPanel jPanelBot
jPanelEdit
JPanel jPanelEdit
jPanelEditExt
JPanel jPanelEditExt
jPanelEditInt
JPanel jPanelEditInt
jScrollPaneList
JScrollPane jScrollPaneList
jScrollPaneCMLFile
JScrollPane jScrollPaneCMLFile
borderLayout2
BorderLayout borderLayout2
jEditorPaneCMLFile
JEditorPane jEditorPaneCMLFile
jScrollPaneCMLSummary
JScrollPane jScrollPaneCMLSummary
borderLayoutSummary2
BorderLayout borderLayoutSummary2
jEditorPaneCMLSummary
JEditorPane jEditorPaneCMLSummary
border1
Border border1
border2
Border border2
border3
Border border3
border2s
Border border2s
border3s
Border border3s
jTextAreaValue
JTextArea jTextAreaValue
jPanelList
JPanel jPanelList
jPanelInput
JPanel jPanelInput
borderLayout3
BorderLayout borderLayout3
borderLayout4
BorderLayout borderLayout4
listModelXPaths
DefaultListModel listModelXPaths
jListXPaths
JList jListXPaths
jButtonSave
JButton jButtonSave
jButtonValidate
JButton jButtonValidate
jTextAreaXPathString
JTextArea jTextAreaXPathString
jPanel1
JPanel jPanel1
jPanel2
JPanel jPanel2
borderLayout44
BorderLayout borderLayout44
border4
Border border4
border5
Border border5
jLabelFileName
JLabel jLabelFileName
eventIf
ProjectEventListener eventIf
text
String text
prefColour
Color prefColour
logger
ClassLogger logger
totalStringLength
int totalStringLength
maxWidth
int maxWidth
defaultHeight
int defaultHeight
defaultWidth
int defaultWidth
project
Project project
allDataSets
DataSetInfo allDataSets
cancelled
boolean cancelled
standAlone
boolean standAlone
defaultPlotLocation
String defaultPlotLocation
jMenuBarMainMenu
JMenuBar jMenuBarMainMenu
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelSelection
JPanel jPanelSelection
jButtonPlot
JButton jButtonPlot
jButtonClose
JButton jButtonClose
jButtonRefresh
JButton jButtonRefresh
gridLayout1
GridLayout gridLayout1
jScrollPaneMain
JScrollPane jScrollPaneMain
jTableDataSets
JTable jTableDataSets
jButtonDelete
JButton jButtonDelete
jButtonRename
JButton jButtonRename
jPanel1
JPanel jPanel1
jPanel2
JPanel jPanel2
borderLayout2
BorderLayout borderLayout2
jComboBoxPlotFrames
JComboBox jComboBoxPlotFrames
jButtonNew
JButton jButtonNew
jTextFieldSelected
JTextField jTextFieldSelected
jButtonEdit
JButton jButtonEdit
borderLayout1
BorderLayout borderLayout1
jPanel3
JPanel jPanel3
jButtonDesc
JButton jButtonDesc
jPanelDesc
JPanel jPanelDesc
jScrollPane1
JScrollPane jScrollPane1
jEditorPane1
JEditorPane jEditorPane1
borderLayout3
BorderLayout borderLayout3
border1
Border border1
border2
Border border2
logger
ClassLogger logger
comboBox
JComboBox comboBox
allIntegers
Vector<E> allIntegers
- To do:
- do better?
allStrings
Vector<E> allStrings
logger
ClassLogger logger
comboBox
JComboBox comboBox
allObjects
Vector<E> allObjects
logger
ClassLogger logger
cancelled
boolean cancelled
standalone
boolean standalone
listModelGroupsIn
DefaultListModel listModelGroupsIn
listModelGroupsOut
DefaultListModel listModelGroupsOut
defaultMechSelection
String defaultMechSelection
spacing
String spacing
pointProcessSelection
String pointProcessSelection
passivePropsSelection
String passivePropsSelection
specCapSelection
String specCapSelection
specAxResSelection
String specAxResSelection
sbmlSelection
String sbmlSelection
extraMechSelection
String extraMechSelection
apPropVelSelection
String apPropVelSelection
ionPropsSelection
String ionPropsSelection
myParent
Frame myParent
project
Project project
mechType
String mechType
myCell
Cell myCell
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelSelectMech
JPanel jPanelSelectMech
jPanelLists
JPanel jPanelLists
jLabelSelect
JLabel jLabelSelect
jComboBoxMechNames
JComboBox jComboBoxMechNames
jListGroupsOut
JList jListGroupsOut
jListGroupsIn
JList jListGroupsIn
scrollPaneSectionsOut
JScrollPane scrollPaneSectionsOut
scrollPaneSectionsIn
JScrollPane scrollPaneSectionsIn
jPanelGroupsIn
JPanel jPanelGroupsIn
jPanelSwitch
JPanel jPanelSwitch
jPanelGroupsOut
JPanel jPanelGroupsOut
jButtonAdd
JButton jButtonAdd
jButtonRemove
JButton jButtonRemove
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelGroupsOut
JLabel jLabelGroupsOut
borderLayout2
BorderLayout borderLayout2
border1
Border border1
border2
Border border2
jLabelGroupsIn
JLabel jLabelGroupsIn
borderLayout3
BorderLayout borderLayout3
border3
Border border3
border4
Border border4
gridBagLayout2
GridBagLayout gridBagLayout2
jButtonEditValue
JButton jButtonEditValue
jButtonEditExtraValue
JButton jButtonEditExtraValue
jButtonOK
JButton jButtonOK
gridBagLayout3
GridBagLayout gridBagLayout3
logger
ClassLogger logger
cancelled
boolean cancelled
listModelSectionsIn
DefaultListModel listModelSectionsIn
listModelSectionsOut
DefaultListModel listModelSectionsOut
defaultGroupSelection
String defaultGroupSelection
myParent
Frame myParent
myCell
Cell myCell
updateInterface
UpdateOneCell updateInterface
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelSelectGroup
JPanel jPanelSelectGroup
jPanelLists
JPanel jPanelLists
jLabelSelect
JLabel jLabelSelect
jComboBoxGroupNames
JComboBox jComboBoxGroupNames
jListSectionsOut
JList jListSectionsOut
jListSectionsIn
JList jListSectionsIn
scrollPaneSectionsOut
JScrollPane scrollPaneSectionsOut
scrollPaneSectionsIn
JScrollPane scrollPaneSectionsIn
jPanelSectionsIn
JPanel jPanelSectionsIn
jPanelSwitch
JPanel jPanelSwitch
jPanelSectionsOut
JPanel jPanelSectionsOut
jButtonAdd
JButton jButtonAdd
jButtonRemove
JButton jButtonRemove
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelSectionsOut
JLabel jLabelSectionsOut
borderLayout2
BorderLayout borderLayout2
border1
Border border1
border2
Border border2
jLabelSectionsIn
JLabel jLabelSectionsIn
borderLayout3
BorderLayout borderLayout3
border3
Border border3
border4
Border border4
gridBagLayout2
GridBagLayout gridBagLayout2
jButtonOK
JButton jButtonOK
jButtonRename
JButton jButtonRename
gridBagLayout3
GridBagLayout gridBagLayout3
jButtonAddGroup
JButton jButtonAddGroup
jTextFieldNewGroup
JTextField jTextFieldNewGroup
jPanelAddWhat
JPanel jPanelAddWhat
jLabelAddWhat
JLabel jLabelAddWhat
jRadioButtonAddSections
JRadioButton jRadioButtonAddSections
jRadioButtonAddGroups
JRadioButton jRadioButtonAddGroups
JButtonGroup
ButtonGroup JButtonGroup
logger
ClassLogger logger
cancelled
boolean cancelled
listModelGroupsIn
DefaultListModel listModelGroupsIn
listModelGroupsOut
DefaultListModel listModelGroupsOut
defaultProcessSelection
String defaultProcessSelection
myParent
Frame myParent
mechOptions
Vector<E> mechOptions
processType
String processType
myCell
Cell myCell
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelSelectProcess
JPanel jPanelSelectProcess
jPanelLists
JPanel jPanelLists
jLabelSelect
JLabel jLabelSelect
jComboBoxProcessNames
JComboBox jComboBoxProcessNames
jListGroupsOut
JList jListGroupsOut
jListGroupsIn
JList jListGroupsIn
scrollPaneSectionsOut
JScrollPane scrollPaneSectionsOut
scrollPaneSectionsIn
JScrollPane scrollPaneSectionsIn
jPanelGroupsIn
JPanel jPanelGroupsIn
jPanelSwitch
JPanel jPanelSwitch
jPanelGroupsOut
JPanel jPanelGroupsOut
jButtonAdd
JButton jButtonAdd
jButtonRemove
JButton jButtonRemove
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelGroupsOut
JLabel jLabelGroupsOut
borderLayout2
BorderLayout borderLayout2
border1
Border border1
border2
Border border2
jLabelGroupsIn
JLabel jLabelGroupsIn
borderLayout3
BorderLayout borderLayout3
border3
Border border3
border4
Border border4
gridBagLayout2
GridBagLayout gridBagLayout2
jButtonOK
JButton jButtonOK
gridBagLayout3
GridBagLayout gridBagLayout3
border5
Border border5
logger
ClassLogger logger
project
Project project
simData
SimulationData simData
standalone
boolean standalone
jPanelMain
JPanel jPanelMain
jPanelInfo
JPanel jPanelInfo
jLabelMain
JLabel jLabelMain
jPanelOptions
JPanel jPanelOptions
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jButtonCreate
JButton jButtonCreate
jTextAreaInfo
JTextArea jTextAreaInfo
allCellGroupCBs
ArrayList<E> allCellGroupCBs
serialVersionUID: -154251755576893475L
standalone
boolean standalone
SELECT_INFO
String SELECT_INFO
defaultPlotLocation
String defaultPlotLocation
myFile
File myFile
jButtonCancel
JButton jButtonCancel
jButtonPlot
JButton jButtonPlot
jButtonPlotAll
JButton jButtonPlotAll
jComboBox1
JComboBox jComboBox1
jComboBoxPlotFrames
JComboBox jComboBoxPlotFrames
jLabel1
JLabel jLabel1
jPanel1
JPanel jPanel1
jPanel2
JPanel jPanel2
jPanel3
JPanel jPanel3
jScrollPane1
JScrollPane jScrollPane1
jTextAreaMain
JTextArea jTextAreaMain
contentPane
JPanel contentPane
borderLayout1
BorderLayout borderLayout1
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelMainHTMLView
JPanel jPanelMainHTMLView
borderLayout2
BorderLayout borderLayout2
scrollerMain
JScrollPane scrollerMain
jButtonOK
JButton jButtonOK
jEditorPaneMain
JEditorPane jEditorPaneMain
borderLayout3
BorderLayout borderLayout3
standalone
boolean standalone
jPanelMenu
JPanel jPanelMenu
jEditorPaneMenu
JEditorPane jEditorPaneMenu
borderLayout4
BorderLayout borderLayout4
scrollerMenu
JScrollPane scrollerMenu
statusBar
JLabel statusBar
jPanelBrowseButtons
JPanel jPanelBrowseButtons
jButtonBack
JButton jButtonBack
jButtonForwards
JButton jButtonForwards
gridBagLayout1
GridBagLayout gridBagLayout1
jButtonHome
JButton jButtonHome
history
ucl.physiol.neuroconstruct.gui.HelpFrame.History history
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelFile
JPanel jPanelFile
borderLayout1
BorderLayout borderLayout1
jButtonClose
JButton jButtonClose
jEditorPaneMain
JEditorPane jEditorPaneMain
borderLayout2
BorderLayout borderLayout2
border1
Border border1
scroller
JScrollPane scroller
standalone
boolean standalone
source
String source
textFieldsVsInputs
Hashtable<K,V> textFieldsVsInputs
cancelled
boolean cancelled
request
String request
panel1
JPanel panel1
borderLayout1
BorderLayout borderLayout1
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jButtonOk
JButton jButtonOk
jButtonCancel
JButton jButtonCancel
logger
ClassLogger logger
logger
ClassLogger logger
projManager
ProjectManager projManager
base3DPanel
Base3DPanel base3DPanel
initialisingProject
boolean initialisingProject
toolTipText
ToolTipHelper toolTipText
recentFiles
RecentFiles recentFiles
PROJECT_INFO_TAB
String PROJECT_INFO_TAB
CELL_TYPES_TAB
String CELL_TYPES_TAB
REGIONS_TAB
String REGIONS_TAB
CELL_GROUPS_TAB
String CELL_GROUPS_TAB
CELL_MECHANISM_TAB
String CELL_MECHANISM_TAB
NETWORK_TAB
String NETWORK_TAB
GENERATE_TAB
String GENERATE_TAB
VISUALISATION_TAB
String VISUALISATION_TAB
EXPORT_TAB
String EXPORT_TAB
SIMULATOR_SETTINGS_TAB
String SIMULATOR_SETTINGS_TAB
INPUT_OUTPUT_TAB
String INPUT_OUTPUT_TAB
NEURON_SIMULATOR_TAB
String NEURON_SIMULATOR_TAB
NEURON_TAB_GENERATE
String NEURON_TAB_GENERATE
NEURON_TAB_EXTRA
String NEURON_TAB_EXTRA
GENESIS_SIMULATOR_TAB
String GENESIS_SIMULATOR_TAB
GENESIS_TAB_GENERATE
String GENESIS_TAB_GENERATE
GENESIS_TAB_EXTRA
String GENESIS_TAB_EXTRA
PSICS_SIMULATOR_TAB
String PSICS_SIMULATOR_TAB
PYNN_SIMULATOR_TAB
String PYNN_SIMULATOR_TAB
MORPHML_TAB
String MORPHML_TAB
optFrame
OptionsFrame optFrame
jTextFieldIClampAmplitude
JTextField jTextFieldIClampAmplitude
jTextFieldIClampDuration
JTextField jTextFieldIClampDuration
jTextFieldNetStimNumber
JTextField jTextFieldNetStimNumber
jTextFieldNetStimNoise
JTextField jTextFieldNetStimNoise
defaultAnalyseCellGroupString
String defaultAnalyseCellGroupString
defaultAnalyseNetConnString
String defaultAnalyseNetConnString
generatePleaseWait
String generatePleaseWait
sourceOfCellPosnsInMemory
int sourceOfCellPosnsInMemory
choice3DChoiceMain
String choice3DChoiceMain
choice3DSingleCells
String choice3DSingleCells
choice3DPrevSims
String choice3DPrevSims
defaultCellTypeToView
String defaultCellTypeToView
noNeuroMLFilesFound
String noNeuroMLFilesFound
defaultNeuronFilesText
String defaultNeuronFilesText
defaultGenesisFilesText
String defaultGenesisFilesText
defaultPyNNFilesText
String defaultPyNNFilesText
defaultPsicsFilesText
String defaultPsicsFilesText
welcomeText
String welcomeText
contentPane
JPanel contentPane
jMenuBar1
JMenuBar jMenuBar1
jMenuFile
JMenu jMenuFile
jMenuFileExit
JMenuItem jMenuFileExit
jMenuHelp
JMenu jMenuHelp
jMenuHelpAbout
JMenuItem jMenuHelpAbout
jToolBar
JToolBar jToolBar
jButtonOpenProject
JButton jButtonOpenProject
jButtonSaveProject
JButton jButtonSaveProject
jButtonPreferences
JButton jButtonPreferences
jButtonCloseProject
JButton jButtonCloseProject
jButtonToggleTips
JButton jButtonToggleTips
jButtonToggleConsoleOut
JButton jButtonToggleConsoleOut
imageNewProject
ImageIcon imageNewProject
imageOpenProject
ImageIcon imageOpenProject
imageSaveProject
ImageIcon imageSaveProject
imageCloseProject
ImageIcon imageCloseProject
imageProjectPrefs
ImageIcon imageProjectPrefs
imageTips
ImageIcon imageTips
imageNoTips
ImageIcon imageNoTips
imageConsoleOut
ImageIcon imageConsoleOut
imageNoConsoleOut
ImageIcon imageNoConsoleOut
statusBar
JLabel statusBar
borderLayout1
BorderLayout borderLayout1
jMenuItemFileOpen
JMenuItem jMenuItemFileOpen
jMenuItemSaveProject
JMenuItem jMenuItemSaveProject
jMenuSettings
JMenu jMenuSettings
jMenuItemProjProperties
JMenuItem jMenuItemProjProperties
jMenuTools
JMenu jMenuTools
jMenuItemNmodlEditor
JMenuItem jMenuItemNmodlEditor
jMenuItemNewProject
JMenuItem jMenuItemNewProject
jButtonNewProject
JButton jButtonNewProject
jButtonValidate
JButton jButtonValidate
jTabbedPaneMain
JTabbedPane jTabbedPaneMain
jTabbedPaneExportFormats
JTabbedPane jTabbedPaneExportFormats
jPanelExportNeuron
JPanel jPanelExportNeuron
jPanelExportGenesis
JPanel jPanelExportGenesis
jPanelExportPsics
JPanel jPanelExportPsics
jPanelExportPynn
JPanel jPanelExportPynn
jPanelProjInfo
JPanel jPanelProjInfo
jPanelRegions
JPanel jPanelRegions
jPanelCellTypes
JPanel jPanelCellTypes
jPanelCellGroupDetails
JPanel jPanelCellGroupDetails
jPanel3DDemo
JPanel jPanel3DDemo
borderLayout2
BorderLayout borderLayout2
borderLayout3
BorderLayout borderLayout3
jButtonCellTypeNew
JButton jButtonCellTypeNew
jPanelRegionsButtons
JPanel jPanelRegionsButtons
jButtonRegionNew
JButton jButtonRegionNew
jPanelRegionsTable
JPanel jPanelRegionsTable
borderLayout4
BorderLayout borderLayout4
jPanel3DMain
JPanel jPanel3DMain
jPanel3DButtons
JPanel jPanel3DButtons
borderLayout5
BorderLayout borderLayout5
jButton3DView
JButton jButton3DView
jPanelCellTypeDetails
JPanel jPanelCellTypeDetails
jTreeCellDetails
JTree jTreeCellDetails
jPanelHocFile1Buttons
JPanel jPanelHocFile1Buttons
jPanelHocFile2Buttons
JPanel jPanelHocFile2Buttons
jPanelPsicsFileView
JPanel jPanelPsicsFileView
jPanelPsicsPostOptions
JPanel jPanelPsicsPostOptions
jPanelPsicsDiscOptions
JPanel jPanelPsicsDiscOptions
jPanelPynnFileView
JPanel jPanelPynnFileView
jPanelCellGroupsMainPanel
JPanel jPanelCellGroupsMainPanel
borderLayout6
BorderLayout borderLayout6
jButtonNeuronRun
JButton jButtonNeuronRun
jButtonNeuronCreateLocal
JButton jButtonNeuronCreateLocal
jButton3DDestroy
JButton jButton3DDestroy
jScrollPaneRegions
JScrollPane jScrollPaneRegions
jTable3DRegions
JTable jTable3DRegions
jPanelCellGroupButtons
JPanel jPanelCellGroupButtons
jButtonCellGroupsNew
JButton jButtonCellGroupsNew
jScrollPaneCellGroups
JScrollPane jScrollPaneCellGroups
jTableCellGroups
JTable jTableCellGroups
borderLayout7
BorderLayout borderLayout7
borderLayout8
BorderLayout borderLayout8
jPanelMainInfo
JPanel jPanelMainInfo
jLabelName
JLabel jLabelName
jLabelMainNumCells
JLabel jLabelMainNumCells
jLabelProjDescription
JLabel jLabelProjDescription
jTextFieldProjName
JTextField jTextFieldProjName
gridBagLayout2
GridBagLayout gridBagLayout2
jTextAreaProjDescription
JTextArea jTextAreaProjDescription
jScrollPaneProjDesc
JScrollPane jScrollPaneProjDesc
jPanelSimConfigClicks
ClickPanel jPanelSimConfigClicks
jLabelSimConfigs
JLabel jLabelSimConfigs
jPanelCellClicks
ClickPanel jPanelCellClicks
jPanelNetworkSettings
JPanel jPanelNetworkSettings
jMenuItemCloseProject
JMenuItem jMenuItemCloseProject
jLabelTitle
JLabel jLabelTitle
jPanelExport
JPanel jPanelExport
borderLayout10
BorderLayout borderLayout10
jLabelSimDefDur
JLabel jLabelSimDefDur
jTextFieldSimDefDur
JTextField jTextFieldSimDefDur
jPanelNetSetSimple
JPanel jPanelNetSetSimple
defaultCellGroupStimulation
String defaultCellGroupStimulation
cellComboPrompt
String cellComboPrompt
neuronBlockPrompt
String neuronBlockPrompt
genesisBlockPrompt
String genesisBlockPrompt
jPanelSimSettings
JPanel jPanelSimSettings
jLabelSimDT
JLabel jLabelSimDT
jTextFieldSimDT
JTextField jTextFieldSimDT
jPanelSimValsInput
JPanel jPanelSimValsInput
borderLayout12
BorderLayout borderLayout12
jLabelSimSummary
JLabel jLabelSimSummary
jPanelCellTypeInfo
JPanel jPanelCellTypeInfo
jButton3DSettings
JButton jButton3DSettings
jButton3DHelp
JButton jButton3DHelp
jButtonNeuronView
JButton jButtonNeuronView
jButtonPsicsView
JButton jButtonPsicsView
jButtonPynnView
JButton jButtonPynnView
jPanelSimStorage
JPanel jPanelSimStorage
jLabelSimRef
JLabel jLabelSimRef
jTextFieldSimRef
JTextField jTextFieldSimRef
jRadioButtonNeuronSimSaveToFile
JRadioButton jRadioButtonNeuronSimSaveToFile
buttonGroupSimSavePreference
ButtonGroup buttonGroupSimSavePreference
jPanelNetSetControls
JPanel jPanelNetSetControls
jButtonNetSetAddNew
JButton jButtonNetSetAddNew
jPanelNetSetTable
JPanel jPanelNetSetTable
borderLayout13
BorderLayout borderLayout13
jButtonCellTypeViewCell
JButton jButtonCellTypeViewCell
jButtonCellTypeViewCellChans
JButton jButtonCellTypeViewCellChans
jLabelExistingCellTypes
JLabel jLabelExistingCellTypes
jComboBoxCellTypes
JComboBox jComboBoxCellTypes
jComboBoxNeuronExtraBlocks
JComboBox jComboBoxNeuronExtraBlocks
jPanelCBNeuronExtraBlocks
JPanel jPanelCBNeuronExtraBlocks
jComboBoxGenesisExtraBlocks
JComboBox jComboBoxGenesisExtraBlocks
jPanelCBGenesisExtraBlocks
JPanel jPanelCBGenesisExtraBlocks
scrollerCellTypeInfo
JScrollPane scrollerCellTypeInfo
jEditorPaneCellTypeInfo
JEditorPane jEditorPaneCellTypeInfo
jEditorPaneGenerateInfo
JEditorPane jEditorPaneGenerateInfo
jPanelGenerate
JPanel jPanelGenerate
jPanelGenerateMain
JPanel jPanelGenerateMain
jPanelGenerateButtonsDesc
JPanel jPanelGenerateButtonsDesc
jPanelGenerateLoadSave
JPanel jPanelGenerateLoadSave
jPanelGenerateButtons
JPanel jPanelGenerateButtons
jPanelGenerateDesc
JPanel jPanelGenerateDesc
borderLayout14
BorderLayout borderLayout14
jButtonGenerate
JButton jButtonGenerate
jComboBoxSimConfig
JComboBox jComboBoxSimConfig
jButtonGenerateSave
JButton jButtonGenerateSave
jButtonGenerateLoad
JButton jButtonGenerateLoad
jRadioButtonNMLSavePlainText
JRadioButton jRadioButtonNMLSavePlainText
jRadioButtonNMLSaveZipped
JRadioButton jRadioButtonNMLSaveZipped
jRadioButtonNMLSaveHDF5
JRadioButton jRadioButtonNMLSaveHDF5
buttonGroupNMLSave
ButtonGroup buttonGroupNMLSave
jCheckBoxGenerateExtraNetComments
JCheckBox jCheckBoxGenerateExtraNetComments
jButtonSimConfigEdit
JButton jButtonSimConfigEdit
scrollerGenerate
JScrollPane scrollerGenerate
jButtonRegionRemove
JButton jButtonRegionRemove
jButtonCellGroupsDelete
JButton jButtonCellGroupsDelete
jScrollPaneNetConnects
JScrollPane jScrollPaneNetConnects
jScrollPaneAAConns
JScrollPane jScrollPaneAAConns
jTableNetConns
JTable jTableNetConns
jTableAAConns
JTable jTableAAConns
borderLayout15
BorderLayout borderLayout15
jButtonNetConnDelete
JButton jButtonNetConnDelete
jRadioButtonNeuronSimDontRecord
JRadioButton jRadioButtonNeuronSimDontRecord
imageNeuroConstruct
ImageIcon imageNeuroConstruct
border1
Border border1
gridBagLayout4
GridBagLayout gridBagLayout4
jPanelNmodl
JPanel jPanelNmodl
jPanelSynapseButtons
JPanel jPanelSynapseButtons
jPanelSynapseMain
JPanel jPanelSynapseMain
jScrollPaneSynapses
JScrollPane jScrollPaneSynapses
jScrollPaneChanMechs
JScrollPane jScrollPaneChanMechs
jTableSynapses
JTable jTableSynapses
jTableChanMechs
JTable jTableChanMechs
borderLayout16
BorderLayout borderLayout16
jPanelStims
JPanel jPanelStims
borderLayout17
BorderLayout borderLayout17
buttonGroupStim
ButtonGroup buttonGroupStim
buttonGroupStimCellChoice
ButtonGroup buttonGroupStimCellChoice
jPanelGenerateAnalyse
JPanel jPanelGenerateAnalyse
jLabelGenAnalyse
JLabel jLabelGenAnalyse
jComboBoxAnalyseCellGroup
JComboBox jComboBoxAnalyseCellGroup
jComboBoxAnalyseNetConn
JComboBox jComboBoxAnalyseNetConn
gridBagLayout1
GridBagLayout gridBagLayout1
jComboBoxView3DChoice
JComboBox jComboBoxView3DChoice
jButtonSynapseEdit
JButton jButtonSynapseEdit
jMenuItemGeneralProps
JMenuItem jMenuItemGeneralProps
jButtonGenerateStop
JButton jButtonGenerateStop
jTextAreaSimConfigDesc
JTextArea jTextAreaSimConfigDesc
jPanelRandomGen
JPanel jPanelRandomGen
jLabelRandomGenDesc
JLabel jLabelRandomGenDesc
jTextFieldRandomGen
JTextField jTextFieldRandomGen
jCheckBoxRandomGen
JCheckBox jCheckBoxRandomGen
jPanelNeuronNumInt
JPanel jPanelNeuronNumInt
jCheckBoxNeuronNumInt
JCheckBox jCheckBoxNeuronNumInt
jCheckBoxNeuronGenAllMod
JCheckBox jCheckBoxNeuronGenAllMod
jCheckBoxNeuronCopySimFiles
JCheckBox jCheckBoxNeuronCopySimFiles
jCheckBoxGenesisCopySimFiles
JCheckBox jCheckBoxGenesisCopySimFiles
jCheckBoxGenesisMooseMode
JCheckBox jCheckBoxGenesisMooseMode
jCheckBoxGenesisReload
JCheckBox jCheckBoxGenesisReload
jLabelGenesisReload
JLabel jLabelGenesisReload
jTextFieldGenesisReload
JTextField jTextFieldGenesisReload
jCheckBoxGenesisAbsRefract
JCheckBox jCheckBoxGenesisAbsRefract
jLabelGenesisAbsRefract
JLabel jLabelGenesisAbsRefract
jTextFieldGenesisAbsRefract
JTextField jTextFieldGenesisAbsRefract
jCheckBoxNeuronForceCorrInit
JCheckBox jCheckBoxNeuronForceCorrInit
jCheckBoxNeuronModSilent
JCheckBox jCheckBoxNeuronModSilent
buttonGroupNeuronFormat
ButtonGroup buttonGroupNeuronFormat
jLabelNeuronFormat
JLabel jLabelNeuronFormat
jRadioButtonNeuronFormatText
JRadioButton jRadioButtonNeuronFormatText
jRadioButtonNeuronFormatHDF5
JRadioButton jRadioButtonNeuronFormatHDF5
jPanelNeuronRandomGen
JPanel jPanelNeuronRandomGen
jLabelNeuronRandomGenDesc
JLabel jLabelNeuronRandomGenDesc
jTextFieldNeuronRandomGen
JTextField jTextFieldNeuronRandomGen
jCheckBoxNeuronRandomGen
JCheckBox jCheckBoxNeuronRandomGen
jLabelPyNNRandomGenDesc
JLabel jLabelPyNNRandomGenDesc
jTextFieldPyNNRandomGen
JTextField jTextFieldPyNNRandomGen
jCheckBoxPyNNRandomGen
JCheckBox jCheckBoxPyNNRandomGen
jCheckBoxPsicsShowHtml
JCheckBox jCheckBoxPsicsShowHtml
jCheckBoxPsicsShowPlot
JCheckBox jCheckBoxPsicsShowPlot
jCheckBoxPsicsConsole
JCheckBox jCheckBoxPsicsConsole
jLabelPsicsSpatDisc
JLabel jLabelPsicsSpatDisc
jTextFieldPsicsSpatDisc
JTextField jTextFieldPsicsSpatDisc
jLabelPsicsSingleCond
JLabel jLabelPsicsSingleCond
jTextFieldPsicsSingleCond
JTextField jTextFieldPsicsSingleCond
jPanelNeuronExtraLinks
JPanel jPanelNeuronExtraLinks
jLabelNeuronExtraLinks
JLabel jLabelNeuronExtraLinks
jPanelGenesisExtraLinks
JPanel jPanelGenesisExtraLinks
jLabelGenesisExtraLinks
JLabel jLabelGenesisExtraLinks
jPanelGenesisRandomGen
JPanel jPanelGenesisRandomGen
jPanelGenesisComps
JPanel jPanelGenesisComps
jLabelGenesisCompsDesc
JLabel jLabelGenesisCompsDesc
jLabelGenesisRandomGenDesc
JLabel jLabelGenesisRandomGenDesc
jTextFieldGenesisRandomGen
JTextField jTextFieldGenesisRandomGen
jCheckBoxGenesisRandomGen
JCheckBox jCheckBoxGenesisRandomGen
jButtonNetConnEdit
JButton jButtonNetConnEdit
jButtonAnalyseConnLengths
JButton jButtonAnalyseConnLengths
jButtonAnalyseNumConns
JButton jButtonAnalyseNumConns
jButtonNetworkFullInfo
JButton jButtonNetworkFullInfo
jButtonAnalyseCellDensities
JButton jButtonAnalyseCellDensities
jPanelGenerateComboBoxes
JPanel jPanelGenerateComboBoxes
jPanelGenerateAnalyseButtons
JPanel jPanelGenerateAnalyseButtons
borderLayout18
BorderLayout borderLayout18
borderLayout19
BorderLayout borderLayout19
jPanelChannelMechsInnerTab
JPanel jPanelChannelMechsInnerTab
jPanelChannelMechsMain
JPanel jPanelChannelMechsMain
borderLayout20
BorderLayout borderLayout20
gridLayout1
GridLayout gridLayout1
borderLayout11
BorderLayout borderLayout11
jLabelChanMechTitle
JLabel jLabelChanMechTitle
border2
Border border2
jLabelSynapseTitle
JLabel jLabelSynapseTitle
jMenuItemZipUp
JMenuItem jMenuItemZipUp
jLabelNumCellGroups
JLabel jLabelNumCellGroups
jPanelCellGroupClicks
ClickPanel jPanelCellGroupClicks
jLabelProjFileVersion
JLabel jLabelProjFileVersion
jTextFieldProjFileVersion
JTextField jTextFieldProjFileVersion
jMenuItemUnzipProject
JMenuItem jMenuItemUnzipProject
jMenuItemImportLevel123
JMenuItem jMenuItemImportLevel123
jMenuExamples
JMenu jMenuExamples
jMenuModels
JMenu jMenuModels
jMenuOsbModels
JMenu jMenuOsbModels
jPanelAllNetSettings
JPanel jPanelAllNetSettings
jPanelNetSetAA
JPanel jPanelNetSetAA
borderLayout9
BorderLayout borderLayout9
gridLayout2
GridLayout gridLayout2
gridLayout3
GridLayout gridLayout3
jPanelSynapseButtonsOnly
JPanel jPanelSynapseButtonsOnly
borderLayout21
BorderLayout borderLayout21
jPanelChanMechsButtonsOnly
JPanel jPanelChanMechsButtonsOnly
borderLayout22
BorderLayout borderLayout22
jPanelNetConnButtonsOnly
JPanel jPanelNetConnButtonsOnly
jLabelNetConnSimpleConn
JLabel jLabelNetConnSimpleConn
borderLayout23
BorderLayout borderLayout23
jPanelNetSetAAControls
JPanel jPanelNetSetAAControls
jPanelNetSetAATable
JPanel jPanelNetSetAATable
jLabelNetSetAA
JLabel jLabelNetSetAA
jButtonNetAAAdd
JButton jButtonNetAAAdd
jPanelNetSetAAConButtons
JPanel jPanelNetSetAAConButtons
borderLayout24
BorderLayout borderLayout24
borderLayout25
BorderLayout borderLayout25
jButtonCellGroupsEdit
JButton jButtonCellGroupsEdit
gridLayout4
GridLayout gridLayout4
jButtonNetAADelete
JButton jButtonNetAADelete
jButtonNetAAEdit
JButton jButtonNetAAEdit
jMenuItemViewProjSource
JMenuItem jMenuItemViewProjSource
jPanelCellTypeMainInfo
JPanel jPanelCellTypeMainInfo
jButtonCellTypeViewCellInfo
JButton jButtonCellTypeViewCellInfo
jPanelGenesisMain
JPanel jPanelGenesisMain
jPanelPsicsMain
JPanel jPanelPsicsMain
jPanelPynnMain
JPanel jPanelPynnMain
jCheckBoxPynnShowTraces
JCheckBox jCheckBoxPynnShowTraces
jPanelPynnOptions1
JPanel jPanelPynnOptions1
jPanelPynnOptions2
JPanel jPanelPynnOptions2
borderLayout26
BorderLayout borderLayout26
jLabelGenesisMain
JLabel jLabelGenesisMain
jLabelPsicsMain
JLabel jLabelPsicsMain
jLabelPynnMain
JLabel jLabelPynnMain
jPanelSimNeosimMain
JPanel jPanelSimNeosimMain
jLabelSimulatorNeosimMain
JLabel jLabelSimulatorNeosimMain
borderLayout27
BorderLayout borderLayout27
jButtonCellTypeDelete
JButton jButtonCellTypeDelete
jButtonCellTypeCompare
JButton jButtonCellTypeCompare
jPanelCellTypeMainButtons
JPanel jPanelCellTypeMainButtons
borderLayout29
BorderLayout borderLayout29
borderLayout30
BorderLayout borderLayout30
jPanelCellTypesAddNewCell
JPanel jPanelCellTypesAddNewCell
jPanelCellTypesComboBox
JPanel jPanelCellTypesComboBox
flowLayout1
FlowLayout flowLayout1
jButtonCellTypeCopy
JButton jButtonCellTypeCopy
jPanelCellTypesButtonsInfo
JPanel jPanelCellTypesButtonsInfo
jButtonCellTypesMoveToOrigin
JButton jButtonCellTypesMoveToOrigin
jPanelCellTypeManageNumbers
JPanel jPanelCellTypeManageNumbers
jPanelCellTypesModify
JPanel jPanelCellTypesModify
jButtonCellTypesConnect
JButton jButtonCellTypesConnect
jButtonCellTypesMakeSimpConn
JButton jButtonCellTypesMakeSimpConn
flowLayout3
FlowLayout flowLayout3
jLabelMainLastModified
JLabel jLabelMainLastModified
jTextFieldMainLastModified
JTextField jTextFieldMainLastModified
jMenuItemGlossaryShow
JMenuItem jMenuItemGlossaryShow
jMenuItemReleaseNotes
JMenuItem jMenuItemReleaseNotes
jMenuItemCheckUpdates
JMenuItem jMenuItemCheckUpdates
jPanelExportHeader
JPanel jPanelExportHeader
jLabelExportMain
JLabel jLabelExportMain
jTabbedPaneNeuron
JTabbedPane jTabbedPaneNeuron
jPanelNeuronMainSettings
JPanel jPanelNeuronMainSettings
gridLayout5
GridLayout gridLayout5
jPanelNeuroML
JPanel jPanelNeuroML
jButtonNeuroML1Export
JButton jButtonNeuroML1Export
jButtonNeuroML2Export
JButton jButtonNeuroML2Export
jButtonNeuroML2Lems
JButton jButtonNeuroML2Lems
jButtonNeuroML2Graph
JButton jButtonNeuroML2Graph
jButtonNeuroML2NineML
JButton jButtonNeuroML2NineML
jRadioButtonNeuroMLLevel1
JRadioButton jRadioButtonNeuroMLLevel1
jRadioButtonNeuroMLLevel2
JRadioButton jRadioButtonNeuroMLLevel2
jRadioButtonNeuroMLLevel3
JRadioButton jRadioButtonNeuroMLLevel3
jRadioButtonNeuroMLV2
JRadioButton jRadioButtonNeuroMLV2
buttonGroupNeuroML
ButtonGroup buttonGroupNeuroML
jLabelNeuroMLMain
JLabel jLabelNeuroMLMain
jPanelNeuroMLL3Exp
JPanel jPanelNeuroMLL3Exp
jPanelNeuroMLHeader
JPanel jPanelNeuroMLHeader
jComboBoxNeuroMLComps
JComboBox jComboBoxNeuroMLComps
jTextAreaNeuroMLCompsDesc
JTextArea jTextAreaNeuroMLCompsDesc
jComboBoxGenesisComps
JComboBox jComboBoxGenesisComps
jTextAreaGenesisCompsDesc
JTextArea jTextAreaGenesisCompsDesc
borderLayout31
BorderLayout borderLayout31
gridLayout6
GridLayout gridLayout6
jPanelNeuroMLMain
JPanel jPanelNeuroMLMain
jLabelNeuroMLGeneratedFiles
JLabel jLabelNeuroMLGeneratedFiles
jComboBoxNeuroML
JComboBox jComboBoxNeuroML
jButtonNeuroMLViewPlain
JButton jButtonNeuroMLViewPlain
jButtonNeuroMLGenSim
JButton jButtonNeuroMLGenSim
jCheckBoxNeuroMLGenNet
JCheckBox jCheckBoxNeuroMLGenNet
jCheckBoxNeuroMLneuroCobjects
JCheckBox jCheckBoxNeuroMLneuroCobjects
jButtonNeuroMLViewFormatted
JButton jButtonNeuroMLViewFormatted
gridBagLayout3
GridBagLayout gridBagLayout3
gridBagLayout33
GridBagLayout gridBagLayout33
jPanelGenesisButtons
JPanel jPanelGenesisButtons
jPanelGenesisView
JPanel jPanelGenesisView
jPanelGenesisSettings
JPanel jPanelGenesisSettings
jButtonGenesisGenerate
JButton jButtonGenesisGenerate
jButtonGenesisRun
JButton jButtonGenesisRun
jPanelPsicsButtons
JPanel jPanelPsicsButtons
jPanelPynnSimOptions
JPanel jPanelPynnSimOptions
jRadioButtonPynnNeuron
JRadioButton jRadioButtonPynnNeuron
jRadioButtonPynnNest2
JRadioButton jRadioButtonPynnNest2
jRadioButtonPynnPcsim
JRadioButton jRadioButtonPynnPcsim
jRadioButtonPynnBrian
JRadioButton jRadioButtonPynnBrian
jRadioButtonPynnPyMoose
JRadioButton jRadioButtonPynnPyMoose
buttonGroupPynn
ButtonGroup buttonGroupPynn
jButtonPsicsGenerate
JButton jButtonPsicsGenerate
jButtonPsicsRun
JButton jButtonPsicsRun
jPanelPynnButtons
JPanel jPanelPynnButtons
jButtonPynnGenerate
JButton jButtonPynnGenerate
jButtonPynnRun
JButton jButtonPynnRun
borderLayout32
BorderLayout borderLayout32
jButtonGenesisView
JButton jButtonGenesisView
jButtonRegionsEdit
JButton jButtonRegionsEdit
jPanelNeuronExtraHoc
JPanel jPanelNeuronExtraHoc
jPanelNeuronExtraHocBlock
JPanel jPanelNeuronExtraHocBlock
gridLayout7
GridLayout gridLayout7
jPanelNeuronBlockDesc
JPanel jPanelNeuronBlockDesc
jPanelGenesisBlockDesc
JPanel jPanelGenesisBlockDesc
jTextAreaNeuronBlockDesc
JTextArea jTextAreaNeuronBlockDesc
jTextAreaGenesisBlockDesc
JTextArea jTextAreaGenesisBlockDesc
jScrollPaneNeuronBlock
JScrollPane jScrollPaneNeuronBlock
jScrollPaneGenesisBlock
JScrollPane jScrollPaneGenesisBlock
border4
Border border4
jTextAreaNeuronBlock
JTextArea jTextAreaNeuronBlock
jTextAreaGenesisBlock
JTextArea jTextAreaGenesisBlock
flowLayout4
FlowLayout flowLayout4
flowLayout5
FlowLayout flowLayout5
jComboBoxNeuronFileList
JComboBox jComboBoxNeuronFileList
jCheckBoxNeuronLineNums
JCheckBox jCheckBoxNeuronLineNums
jCheckBoxGenesisLineNums
JCheckBox jCheckBoxGenesisLineNums
jComboBoxPynnFileList
JComboBox jComboBoxPynnFileList
jCheckBoxPynnLineNums
JCheckBox jCheckBoxPynnLineNums
jComboBoxPsicsFileList
JComboBox jComboBoxPsicsFileList
jCheckBoxPsicsLineNums
JCheckBox jCheckBoxPsicsLineNums
border5
Border border5
border6
Border border6
jMenuItemCondorMonitor
JMenuItem jMenuItemCondorMonitor
jMenuItemPlotEquation
JMenuItem jMenuItemPlotEquation
jMenuItemPlotImport
JMenuItem jMenuItemPlotImport
jMenuItemPlotImportHDF5
JMenuItem jMenuItemPlotImportHDF5
jMenuItemMPIMonitor
JMenuItem jMenuItemMPIMonitor
jCheckBoxSpecifySimRef
JCheckBox jCheckBoxSpecifySimRef
jCheckBoxNeuronSaveHoc
JCheckBox jCheckBoxNeuronSaveHoc
jButtonNeuronCreateCondor
JButton jButtonNeuronCreateCondor
jButtonNeuronCreatePythonXML
JButton jButtonNeuronCreatePythonXML
jButtonNeuronCreatePyHDF5
JButton jButtonNeuronCreatePyHDF5
jComboBoxGenesisFiles
JComboBox jComboBoxGenesisFiles
jPanelSimGeneral
JPanel jPanelSimGeneral
jPanelInputOutput
JPanel jPanelInputOutput
borderLayout33
BorderLayout borderLayout33
jLabelNeuronMainLabel
JLabel jLabelNeuronMainLabel
border7
Border border7
jPanelSimulationParams
JPanel jPanelSimulationParams
jLabelSimulationGlobRa
JLabel jLabelSimulationGlobRa
jTextFieldSimulationGlobRa
JTextField jTextFieldSimulationGlobRa
jLabelSimulationGlobCm
JLabel jLabelSimulationGlobCm
jTextFieldSimulationGlobCm
JTextField jTextFieldSimulationGlobCm
jTabbedPaneGenesis
JTabbedPane jTabbedPaneGenesis
flowLayout6
FlowLayout flowLayout6
jPanelGenesisExtra
JPanel jPanelGenesisExtra
jPanelGenesisExtraBlock
JPanel jPanelGenesisExtraBlock
flowLayout7
FlowLayout flowLayout7
gridLayout8
GridLayout gridLayout8
jPanelSimulationGlobal
JPanel jPanelSimulationGlobal
jButton3DPrevSimuls
JButton jButton3DPrevSimuls
jButton3DQuickSims
JButton jButton3DQuickSims
jLabelSimulationGlobRm
JLabel jLabelSimulationGlobRm
jTextFieldSimulationGlobRm
JTextField jTextFieldSimulationGlobRm
jLabelSimulationInitVm
JLabel jLabelSimulationInitVm
jTextFieldSimulationInitVm
JTextField jTextFieldSimulationInitVm
jLabelSimulationVLeak
JLabel jLabelSimulationVLeak
jTextFieldSimulationVLeak
JTextField jTextFieldSimulationVLeak
jCheckBoxGenesisSymmetric
JCheckBox jCheckBoxGenesisSymmetric
borderLayout35
BorderLayout borderLayout35
border8
Border border8
jPanelNeuronGraphOptions
JPanel jPanelNeuronGraphOptions
gridBagLayout6
GridBagLayout gridBagLayout6
gridBagLayoutGen
GridBagLayout gridBagLayoutGen
jCheckBoxNeuronShowShapePlot
JCheckBox jCheckBoxNeuronShowShapePlot
jCheckBoxNeuronSumatra
JCheckBox jCheckBoxNeuronSumatra
jRadioButtonNeuronAllGUI
JRadioButton jRadioButtonNeuronAllGUI
jRadioButtonNeuronNoPlots
JRadioButton jRadioButtonNeuronNoPlots
jRadioButtonNeuronNoConsole
JRadioButton jRadioButtonNeuronNoConsole
buttonGroupNeuronGUI
ButtonGroup buttonGroupNeuronGUI
jLabelNeuronGUI
JLabel jLabelNeuronGUI
jRadioButtonGenesisAllGUI
JRadioButton jRadioButtonGenesisAllGUI
jRadioButtonGenesisNoPlots
JRadioButton jRadioButtonGenesisNoPlots
jRadioButtonGenesisNoConsole
JRadioButton jRadioButtonGenesisNoConsole
buttonGroupGenesisGUI
ButtonGroup buttonGroupGenesisGUI
jLabelGenesisGUI
JLabel jLabelGenesisGUI
jPanelSimWhatToRecord
JPanel jPanelSimWhatToRecord
jRadioButtonSimSomaOnly
JRadioButton jRadioButtonSimSomaOnly
jLabelSimWhatToRecord
JLabel jLabelSimWhatToRecord
jRadioButtonSimAllSegments
JRadioButton jRadioButtonSimAllSegments
buttonGroupSimWhatToRecord
ButtonGroup buttonGroupSimWhatToRecord
jRadioButtonSimAllSections
JRadioButton jRadioButtonSimAllSections
buttonGroupGenesisUnits
ButtonGroup buttonGroupGenesisUnits
jPanelGenesisUnits
JPanel jPanelGenesisUnits
jRadioButtonGenesisPhy
JRadioButton jRadioButtonGenesisPhy
jRadioButtonGenesisSI
JRadioButton jRadioButtonGenesisSI
jPanelCellMechanisms
JPanel jPanelCellMechanisms
jPanelProcessButtons
JPanel jPanelProcessButtons
jPanelProcessButtonsTop
JPanel jPanelProcessButtonsTop
jPanelProcessButtonsBottom
JPanel jPanelProcessButtonsBottom
jPanelMechanismMain
JPanel jPanelMechanismMain
jPanelMechanismLabel
JPanel jPanelMechanismLabel
borderLayout28
BorderLayout borderLayout28
JLabelMechanismMain
JLabel JLabelMechanismMain
jScrollPaneMechanisms
JScrollPane jScrollPaneMechanisms
borderLayout36
BorderLayout borderLayout36
jTableMechanisms
JTable jTableMechanisms
jButtonMechanismDelete
JButton jButtonMechanismDelete
jButtonMechanismCopy
JButton jButtonMechanismCopy
jButtonCompareMechanism
JButton jButtonCompareMechanism
jButtonMechanismEditIt
JButton jButtonMechanismEditIt
jButtonMechanismUpdateMaps
JButton jButtonMechanismUpdateMaps
jButtonMechanismReloadFile
JButton jButtonMechanismReloadFile
jButtonMechanismAbstract
JButton jButtonMechanismAbstract
jButtonMechanismTemplateCML
JButton jButtonMechanismTemplateCML
borderLayout37
BorderLayout borderLayout37
border9
Border border9
jMenuItemUnits
JMenuItem jMenuItemUnits
jPanelGenesisChoices
JPanel jPanelGenesisChoices
borderLayout38
BorderLayout borderLayout38
jButtonMechanismFileBased
JButton jButtonMechanismFileBased
jButtonMechanismNewCML
JButton jButtonMechanismNewCML
jLabelSimTemp
JLabel jLabelSimTemp
jTextFieldSimulationTemp
JTextField jTextFieldSimulationTemp
jLabelElectroLenMax
JLabel jLabelElectroLenMax
jTextFieldElectroLenMax
JTextField jTextFieldElectroLenMax
jLabelElectroLenMin
JLabel jLabelElectroLenMin
jTextFieldElectroLenMin
JTextField jTextFieldElectroLenMin
jCheckBoxGenesisComments
JCheckBox jCheckBoxGenesisComments
jCheckBoxGenesisShapePlot
JCheckBox jCheckBoxGenesisShapePlot
jLabelSimStimDesc
JLabel jLabelSimStimDesc
jPanelGenesisCheckBoxes0
JPanel jPanelGenesisCheckBoxes0
jPanelGenesisCheckBoxes1
JPanel jPanelGenesisCheckBoxes1
jPanelGenesisCheckBoxes2
JPanel jPanelGenesisCheckBoxes2
jProgressBarGenerate
JProgressBar jProgressBarGenerate
jPanelGenesisNumMethod
JPanel jPanelGenesisNumMethod
jLabelGenesisNumMethod
JLabel jLabelGenesisNumMethod
jButtonGenesisNumMethod
JButton jButtonGenesisNumMethod
jMenuItemCopyProject
JMenuItem jMenuItemCopyProject
jPanelSimPlot
JPanel jPanelSimPlot
borderLayout39
BorderLayout borderLayout39
jPanelSimRecordWhere
JPanel jPanelSimRecordWhere
borderLayout40
BorderLayout borderLayout40
jPanelSimTotalTime
JPanel jPanelSimTotalTime
borderLayout41
BorderLayout borderLayout41
border10
Border border10
jPanelSimDT
JPanel jPanelSimDT
jTextFieldSimTotalTimeUnits
JTextField jTextFieldSimTotalTimeUnits
jTextFieldSimDTUnits
JTextField jTextFieldSimDTUnits
jScrollPaneSimPlot
JScrollPane jScrollPaneSimPlot
borderLayout42
BorderLayout borderLayout42
jPanelSimPlotButtons
JPanel jPanelSimPlotButtons
jButtonSimPlotAdd
JButton jButtonSimPlotAdd
jTableSimPlot
JTable jTableSimPlot
jTableStims
JTable jTableStims
jButtonSimPlotDelete
JButton jButtonSimPlotDelete
jButtonSimPlotEdit
JButton jButtonSimPlotEdit
jButtonSimPlotCopy
JButton jButtonSimPlotCopy
jPanelSimStimButtons
JPanel jPanelSimStimButtons
jScrollPaneSimStims
JScrollPane jScrollPaneSimStims
jButtonSimStimAdd
JButton jButtonSimStimAdd
jButtonSimStimDelete
JButton jButtonSimStimDelete
jButtonSimStimEdit
JButton jButtonSimStimEdit
jButtonSimStimCopy
JButton jButtonSimStimCopy
gridBagLayout5
GridBagLayout gridBagLayout5
jTextFieldSimUnitInitVm
JTextField jTextFieldSimUnitInitVm
jTextFieldSimUnitVLeak
JTextField jTextFieldSimUnitVLeak
borderLayout34
BorderLayout borderLayout34
jTextFieldSimUnitGlobRa
JTextField jTextFieldSimUnitGlobRa
jTextFieldSimUnitGlotCm
JTextField jTextFieldSimUnitGlotCm
jTextFieldSimUnitGlobRm
JTextField jTextFieldSimUnitGlobRm
jTextFieldSimUnitsTemp
JTextField jTextFieldSimUnitsTemp
jTextFieldElecLenMaxUnits
JTextField jTextFieldElecLenMaxUnits
jTextFieldElecLenMinUnits
JTextField jTextFieldElecLenMinUnits
jMenuItemHelpMain
JMenuItem jMenuItemHelpMain
jMenuItemHelpRelNotes
JMenuItem jMenuItemHelpRelNotes
jCheckBoxNeuronComments
JCheckBox jCheckBoxNeuronComments
jButtonCellTypeBioPhys
JButton jButtonCellTypeBioPhys
jButtonCellTypeEditDesc
JButton jButtonCellTypeEditDesc
jButtonCellTypeOtherProject
JButton jButtonCellTypeOtherProject
jMenuItemJava
JMenuItem jMenuItemJava
jMenuProject
JMenu jMenuProject
jMenuItemGenNetwork
JMenuItem jMenuItemGenNetwork
jMenuItemGenNeuronHoc
JMenuItem jMenuItemGenNeuronHoc
jMenuItemGenNeuronPyXML
JMenuItem jMenuItemGenNeuronPyXML
jMenuItemGenNeuronPyHDF5
JMenuItem jMenuItemGenNeuronPyHDF5
jMenuItemGenGenesis
JMenuItem jMenuItemGenGenesis
jMenuItemGenPsics
JMenuItem jMenuItemGenPsics
jMenuItemGenPynn
JMenuItem jMenuItemGenPynn
jMenuItemPrevSims
JMenuItem jMenuItemPrevSims
jMenuItemDataSets
JMenuItem jMenuItemDataSets
jMenuItemListSims
JMenuItem jMenuItemListSims
updatingTabProjectInfo
boolean updatingTabProjectInfo
logger
ClassLogger logger
panel1
JPanel panel1
panel2
JPanel panel2
insetsPanel1
JPanel insetsPanel1
insetsPanel2
JPanel insetsPanel2
insetsPanel3
JPanel insetsPanel3
button1
JButton button1
imageLabel
JLabel imageLabel
label1
JLabel label1
label2
JLabel label2
label3
JLabel label3
label4
JLabel label4
CommentArea
JTextArea CommentArea
image1
ImageIcon image1
image2
ImageIcon image2
borderLayout1
BorderLayout borderLayout1
borderLayout2
BorderLayout borderLayout2
flowLayout1
FlowLayout flowLayout1
comments
String comments
border1
Border border1
jLabelWeb1
JLabel jLabelWeb1
jLabelWeb2
JLabel jLabelWeb2
jLabelInfo
JLabel jLabelInfo
jLabelLib1
JLabel jLabelLib1
jLabelLib2
JLabel jLabelLib2
jLabelLib3
JLabel jLabelLib3
jLabelLib4
JLabel jLabelLib4
border2
Border border2
gridBagLayout1
GridBagLayout gridBagLayout1
border3
Border border3
logger
ClassLogger logger
cancelled
boolean cancelled
jPanelMain
JPanel jPanelMain
chosenSynapticPropList
Vector<E> chosenSynapticPropList
toolTipText
ToolTipHelper toolTipText
searchPattern
SearchPattern searchPattern
newNetConnMode
boolean newNetConnMode
initiallySuggestedName
String initiallySuggestedName
randomCloseNumber
int randomCloseNumber
- Needed only where searchPattern = RANDOM_CLOSE. It's the number of random
points on the target cell group to pick before selecting the nearest one...
growMode
GrowMode growMode
maxMin
MaxMinLength maxMin
apSpeed
float apSpeed
connConds
ConnectivityConditions connConds
chosenSynapseType
String chosenSynapseType
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelOKCancel
JPanel jPanelOKCancel
jPanelSourceInfo
JPanel jPanelSourceInfo
jPanelTargetInfo
JPanel jPanelTargetInfo
borderLayout1
BorderLayout borderLayout1
jComboBoxSource
JComboBox jComboBoxSource
jComboBoxTarget
JComboBox jComboBoxTarget
project
Project project
sourceComboString
String sourceComboString
targetComboString
String targetComboString
jLabelCellTypeSrc
JLabel jLabelCellTypeSrc
jTextFieldCellTypeSrc
JTextField jTextFieldCellTypeSrc
gridBagLayoutSrc
GridBagLayout gridBagLayoutSrc
jLabelCellTypeTrgt
JLabel jLabelCellTypeTrgt
jTextFieldCellTypeTrgt
JTextField jTextFieldCellTypeTrgt
gridBagLayoutTrgt
GridBagLayout gridBagLayoutTrgt
jPanelName
JPanel jPanelName
jPanelType
JPanel jPanelType
jRadioButtonClosest
JRadioButton jRadioButtonClosest
jRadioButtonRandClose
JRadioButton jRadioButtonRandClose
jRadioButtonCompRandom
JRadioButton jRadioButtonCompRandom
buttonGroupSearchPattern
ButtonGroup buttonGroupSearchPattern
jPanelTop
JPanel jPanelTop
jLabelName
JLabel jLabelName
jLabelSynapseProperties
JLabel jLabelSynapseProperties
jLabelAP
JLabel jLabelAP
jTextFieldAP
JTextField jTextFieldAP
jLabelAPunits
JLabel jLabelAPunits
jTextFieldName
JTextField jTextFieldName
buttonGroupPreSynDistribution
ButtonGroup buttonGroupPreSynDistribution
jPanelGrowMode
JPanel jPanelGrowMode
jPanelExtraParams
JPanel jPanelExtraParams
jPanelSynapseProperties
JPanel jPanelSynapseProperties
borderLayout2
BorderLayout borderLayout2
border1
Border border1
titledBorder1
TitledBorder titledBorder1
border2
Border border2
titledBorder2
TitledBorder titledBorder2
border3
Border border3
titledBorder3
TitledBorder titledBorder3
border4
Border border4
titledBorder4
TitledBorder titledBorder4
jPanelSearch
JPanel jPanelSearch
border5
Border border5
titledBorder5
TitledBorder titledBorder5
jTextFieldRandCloseNumber
JTextField jTextFieldRandCloseNumber
jPanelSourceTarget
JPanel jPanelSourceTarget
flowLayout1
FlowLayout flowLayout1
jLabelRegionSrc
JLabel jLabelRegionSrc
jTextFieldRegionSrc
JTextField jTextFieldRegionSrc
jLabelRegionTgt
JLabel jLabelRegionTgt
jTextFieldRegionTgt
JTextField jTextFieldRegionTgt
gridBagLayout1
GridBagLayout gridBagLayout1
jPanelMaxMin
JPanel jPanelMaxMin
jLabelMax
JLabel jLabelMax
jLabelDim
JLabel jLabelDim
border6
Border border6
titledBorder6
TitledBorder titledBorder6
jTextFieldMax
JTextField jTextFieldMax
jLabelMin
JLabel jLabelMin
jTextFieldMin
JTextField jTextFieldMin
jTextFieldDim
JTextField jTextFieldDim
jLabelAttempts
JLabel jLabelAttempts
jTextFieldAttempts
JTextField jTextFieldAttempts
jPanelConnConds
JPanel jPanelConnConds
jPanelAP
JPanel jPanelAP
border7
Border border7
titledBorder7
TitledBorder titledBorder7
border8
Border border8
titledBorder8
TitledBorder titledBorder8
jRadioButtonSrcToTrgt
JRadioButton jRadioButtonSrcToTrgt
jRadioButtonTrgtToSrc
JRadioButton jRadioButtonTrgtToSrc
buttonGroupSrcTargetDir
ButtonGroup buttonGroupSrcTargetDir
jPanelConnCondRadios
JPanel jPanelConnCondRadios
jLabelConnCondsNum
JLabel jLabelConnCondsNum
jPanelConnCondsNum
JPanel jPanelConnCondsNum
jTextFieldConnCondsNum
JTextField jTextFieldConnCondsNum
jButtonConnCondsNum
JButton jButtonConnCondsNum
jCheckBoxConnCondsUnique
JCheckBox jCheckBoxConnCondsUnique
jPanelConnCondsMaxTarget
JPanel jPanelConnCondsMaxTarget
jPanelConnCondsAutapses
JPanel jPanelConnCondsAutapses
jPanelConnCondsRecurrent
JPanel jPanelConnCondsRecurrent
jLabelConnCondsMaxTarget
JLabel jLabelConnCondsMaxTarget
jTextFieldConnCondsMaxTarget
JTextField jTextFieldConnCondsMaxTarget
jLabelConnCondsAutapses
JLabel jLabelConnCondsAutapses
jCheckBoxAutapses
JCheckBox jCheckBoxAutapses
jCheckBoxRecurrent
JCheckBox jCheckBoxRecurrent
jPanelConnCondsPrePost
JPanel jPanelConnCondsPrePost
jCheckBoxSomaPre
JCheckBox jCheckBoxSomaPre
jCheckBoxDendPre
JCheckBox jCheckBoxDendPre
jCheckBoxAxonPre
JCheckBox jCheckBoxAxonPre
jLabelConnCondsPre
JLabel jLabelConnCondsPre
jCheckBoxSomaPost
JCheckBox jCheckBoxSomaPost
jCheckBoxDendPost
JCheckBox jCheckBoxDendPost
jCheckBoxAxonPost
JCheckBox jCheckBoxAxonPost
jLabelConnCondsPost
JLabel jLabelConnCondsPost
jCheckBoxSomaToSoma
JCheckBox jCheckBoxSomaToSoma
gridBagLayout2
GridBagLayout gridBagLayout2
listModelSyns
DefaultListModel listModelSyns
jListSyns
JList jListSyns
scrollPaneSyns
JScrollPane scrollPaneSyns
jButtonSynPropsAdd
JButton jButtonSynPropsAdd
jButtonSynPropsRemove
JButton jButtonSynPropsRemove
jButtonSynPropsEdit
JButton jButtonSynPropsEdit
logger
ClassLogger logger
cancelled
boolean cancelled
borderLayout1
BorderLayout borderLayout1
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jButtonOK
JButton jButtonOK
jPanelMain
JPanel jPanelMain
jPanelSomaOutline
JPanel jPanelSomaOutline
jCheckBoxSO
JCheckBox jCheckBoxSO
jTextAreaSO
JTextArea jTextAreaSO
jPanelDaughter
JPanel jPanelDaughter
jCheckBoxDaughter
JCheckBox jCheckBoxDaughter
jTextAreaDaughter
JTextArea jTextAreaDaughter
borderLayout2
BorderLayout borderLayout2
jButtonMore
JButton jButtonMore
logger
ClassLogger logger
panel1
JPanel panel1
gridBagLayout1
GridBagLayout gridBagLayout1
jPanelLabel
JPanel jPanelLabel
jPanel2
JPanel jPanel2
jButtonOK
JButton jButtonOK
borderLayout1
BorderLayout borderLayout1
jLabelMain
JLabel jLabelMain
jCheckBoxMoveSomaToOrigin
JCheckBox jCheckBoxMoveSomaToOrigin
jCheckBoxMoveDends
JCheckBox jCheckBoxMoveDends
jTextAreaMoveDends
JTextArea jTextAreaMoveDends
jTextAreaMoveToOrigin1
JTextArea jTextAreaMoveToOrigin1
logger
ClassLogger logger
createCancelled
boolean createCancelled
cellChosen
Cell cellChosen
initiallySuggestedName
String initiallySuggestedName
recentFiles
RecentFiles recentFiles
jPanel1
JPanel jPanel1
jLabelMain
JLabel jLabelMain
jComboBoxCellTypes
JComboBox jComboBoxCellTypes
jButtonCreate
JButton jButtonCreate
jPanel2
JPanel jPanel2
jButtonCancel
JButton jButtonCancel
jLabelName
JLabel jLabelName
jTextFieldNewCellName
JTextField jTextFieldNewCellName
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelFileName
JLabel jLabelFileName
jTextFieldFileName
JTextField jTextFieldFileName
jButtonSelectFile
JButton jButtonSelectFile
myParent
Frame myParent
selectedFileName
String selectedFileName
project
Project project
logger
ClassLogger logger
projFileName
String projFileName
projDirName
String projDirName
panel1
JPanel panel1
jLabelProjName
JLabel jLabelProjName
jTextFieldProjName
JTextField jTextFieldProjName
jTextFieldProjDir
JTextField jTextFieldProjDir
jLabelProjDir
JLabel jLabelProjDir
gridBagLayout1
GridBagLayout gridBagLayout1
jPanelLabel
JPanel jPanelLabel
jPanel2
JPanel jPanel2
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
borderLayout1
BorderLayout borderLayout1
jLabelMain
JLabel jLabelMain
jLabelFullPath
JLabel jLabelFullPath
jLabelFullPathDisplay
JLabel jLabelFullPathDisplay
cancelled
boolean cancelled
jButtonChooseDir
JButton jButtonChooseDir
logger
ClassLogger logger
fixedNumString
String fixedNumString
randomNumString
String randomNumString
gaussianNumString
String gaussianNumString
expressionString
String expressionString
weightGeneratorMode
boolean weightGeneratorMode
cancelled
boolean cancelled
fixedValLabel
JLabel fixedValLabel
fixedValTextField
JTextField fixedValTextField
maxValLabel
JLabel maxValLabel
maxValTextField
JTextField maxValTextField
minValLabel
JLabel minValLabel
minValTextField
JTextField minValTextField
meanValLabel
JLabel meanValLabel
meanValTextField
JTextField meanValTextField
stdDevValLabel
JLabel stdDevValLabel
stdDevValTextField
JTextField stdDevValTextField
panel1
JPanel panel1
borderLayout1
BorderLayout borderLayout1
numGen
NumberGenerator numGen
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jButtonOK
JButton jButtonOK
jLabelType
JLabel jLabelType
jComboBoxType
JComboBox jComboBoxType
jPanelVariables
JPanel jPanelVariables
gridLayout1
GridLayout gridLayout1
border1
Border border1
jPanelIntOrFloat
JPanel jPanelIntOrFloat
jRadioButtonFloat
JRadioButton jRadioButtonFloat
jRadioButtonInt
JRadioButton jRadioButtonInt
buttonGroupNumType
ButtonGroup buttonGroupNumType
borderLayout2
BorderLayout borderLayout2
jPanelType
JPanel jPanelType
jPanelComment
JPanel jPanelComment
jPanelChoices
JPanel jPanelChoices
jLabelComment
JLabel jLabelComment
jExpLabel
JLabel jExpLabel
jExpTexField
JTextField jExpTexField
jChekBoxSomaToSoma
JCheckBox jChekBoxSomaToSoma
logger
ClassLogger logger
mainFrame
MainFrame mainFrame
myStartupMode
int myStartupMode
toolTipText
ToolTipHelper toolTipText
panelMain
JPanel panelMain
borderLayout1
BorderLayout borderLayout1
jTabbedPane1
JTabbedPane jTabbedPane1
jPanelProjProps
JPanel jPanelProjProps
jPanelLogging
JPanel jPanelLogging
jPanelSaveCancel
JPanel jPanelSaveCancel
jPanelSave
JPanel jPanelSave
jButtonSave
JButton jButtonSave
jButtonCancel
JButton jButtonCancel
jLabelLogFileDir
JLabel jLabelLogFileDir
jTextFieldLogDir
JTextField jTextFieldLogDir
jCheckBoxConsole
JCheckBox jCheckBoxConsole
jCheckBoxFileOutput
JCheckBox jCheckBoxFileOutput
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelBackgroundColour
JLabel jLabelBackgroundColour
jButtonBackgroundColour
JButton jButtonBackgroundColour
jCheckBoxShowAxes
JCheckBox jCheckBoxShowAxes
jCheckBoxAntiAliasing
JCheckBox jCheckBoxAntiAliasing
somethingAlteredInProject
boolean somethingAlteredInProject
buttonGroup3DDisplay
ButtonGroup buttonGroup3DDisplay
jPanelGeneral
JPanel jPanelGeneral
jLabelNeuronDir
JLabel jLabelNeuronDir
jTextFieldNeuronLocation
JTextField jTextFieldNeuronLocation
jLabelPsicsDir
JLabel jLabelPsicsDir
jTextFieldPsicsLocation
JTextField jTextFieldPsicsLocation
jLabelPrefProjDir
JLabel jLabelPrefProjDir
jTextFieldPrefProjDir
JTextField jTextFieldPrefProjDir
jLabelBrowserDir
JLabel jLabelBrowserDir
jTextFieldBrowser
JTextField jTextFieldBrowser
jLabelEditorDir
JLabel jLabelEditorDir
jTextFieldEditor
JTextField jTextFieldEditor
jLabelNumProcs
JLabel jLabelNumProcs
jSpinnerNumProcs
JSpinner jSpinnerNumProcs
jLabelNeuroML
JLabel jLabelNeuroML
jComboBoxNeuroML
JComboBox jComboBoxNeuroML
jButtonApply
JButton jButtonApply
gridBagLayout3
GridBagLayout gridBagLayout3
jLabelShow
JLabel jLabelShow
jCheckBoxShowRegions
JCheckBox jCheckBoxShowRegions
jCheckBoxShowInputs
JCheckBox jCheckBoxShowInputs
jCheckBoxShowAxonalArbours
JCheckBox jCheckBoxShowAxonalArbours
jCheckBoxShowSynapseConns
JCheckBox jCheckBoxShowSynapseConns
jCheckBoxShowSynEndPoints
JCheckBox jCheckBoxShowSynEndPoints
jButtonChangeInput
JButton jButtonChangeInput
gridBagLayout2
GridBagLayout gridBagLayout2
jLabelCommandLine
JLabel jLabelCommandLine
jTextFieldCommandLine
JTextField jTextFieldCommandLine
jLabelExplaination
JLabel jLabelExplaination
jLabel1
JLabel jLabel1
jTextPaneExplaination
JTextPane jTextPaneExplaination
jCheckBoxToolTips
JCheckBox jCheckBoxToolTips
jCheckBoxGenMatlab
JCheckBox jCheckBoxGenMatlab
jCheckBoxGenIgor
JCheckBox jCheckBoxGenIgor
jLabelSaveInfo
JLabel jLabelSaveInfo
jRadioButtonSaveSer
JRadioButton jRadioButtonSaveSer
jRadioButtonJavaXML
JRadioButton jRadioButtonJavaXML
gridBagLayout4
GridBagLayout gridBagLayout4
buttonGroupSaveOptions
ButtonGroup buttonGroupSaveOptions
jLabelMinRadius
JLabel jLabelMinRadius
jTextFieldMinRadius
JTextField jTextFieldMinRadius
jLabelRes3DElements
JLabel jLabelRes3DElements
jTextFieldRes3DElements
JTextField jTextFieldRes3DElements
jLabelTrans
JLabel jLabelTrans
jTextFieldTrans
JTextField jTextFieldTrans
jLabelCellColour
JLabel jLabelCellColour
jButtonCellColour
JButton jButtonCellColour
jComboBoxDisplayOptions
JComboBox jComboBoxDisplayOptions
jLabelDisplayOptoin
JLabel jLabelDisplayOptoin
currentColour
Color currentColour
button
JButton button
colourChooser
JColorChooser colourChooser
dialog
JDialog dialog
logger
ClassLogger logger
textFieldsForParameters
Hashtable<K,V> textFieldsForParameters
cancelled
boolean cancelled
jPanelButtons
JPanel jPanelButtons
jPanelMain
JPanel jPanelMain
borderLayout1
BorderLayout borderLayout1
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelTop
JPanel jPanelTop
jLabelMain
JLabel jLabelMain
jComboBoxRegions
JComboBox jComboBoxRegions
jPanelDescription
JPanel jPanelDescription
jTextAreaDescription
JTextArea jTextAreaDescription
jLabelParams
JLabel jLabelParams
borderLayout2
BorderLayout borderLayout2
jPanelParameters
JPanel jPanelParameters
borderLayout3
BorderLayout borderLayout3
border1
Border border1
gridLayoutParameters
GridLayout gridLayoutParameters
jPanelNames
JPanel jPanelNames
jLabel1
JLabel jLabel1
jTextFieldName
JTextField jTextFieldName
jPanelComboStuff
JPanel jPanelComboStuff
borderLayout4
BorderLayout borderLayout4
logger
ClassLogger logger
- To do:
- remove this altogether and replace with JOptionPane.showOptionDialog()
panel1
JPanel panel1
borderLayout1
BorderLayout borderLayout1
jPanel1
JPanel jPanel1
jLabelMain
JLabel jLabelMain
jButtonYes
JButton jButtonYes
jButtonNo
JButton jButtonNo
jPanel2
JPanel jPanel2
saveTheProject
boolean saveTheProject
cancelPressed
boolean cancelPressed
jButtonCancel
JButton jButtonCancel
logger
ClassLogger logger
project
Project project
editable
boolean editable
cancelled
boolean cancelled
okColourBG
Color okColourBG
okColourFG
Color okColourFG
warningColour
Color warningColour
alteredColour
Color alteredColour
updatingFrom3DView
boolean updatingFrom3DView
initialising
boolean initialising
endPointViewer
SimpleViewer endPointViewer
toolTipText
ToolTipHelper toolTipText
myCell
Cell myCell
mainLabel
String mainLabel
defaultSectionItem
String defaultSectionItem
defaultSegmentItem
String defaultSegmentItem
sectionDetails
String sectionDetails
finiteVolYes
String finiteVolYes
finiteVolNo
String finiteVolNo
cylindricalShape
String cylindricalShape
sphericalShape
String sphericalShape
oneCell3DPanel
OneCell3DPanel oneCell3DPanel
segmentsForDeletion
Vector<E> segmentsForDeletion
shownFields
int shownFields
currentlyAddressedSegment
Segment currentlyAddressedSegment
panelButtons
JPanel panelButtons
jPanelParameters
JPanel jPanelParameters
jButtonOK
JButton jButtonOK
borderLayout2
BorderLayout borderLayout2
jButtonCancel
JButton jButtonCancel
jPanelinfo
JPanel jPanelinfo
jLabelName
JLabel jLabelName
jTextFieldSegmentsName
JTextField jTextFieldSegmentsName
jLabelSection
JLabel jLabelSection
jTextFieldID
JTextField jTextFieldID
jComboBoxSection
JComboBox jComboBoxSection
jComboBoxSegment
JComboBox jComboBoxSegment
jLabelMain
JLabel jLabelMain
gridBagLayout1
GridBagLayout gridBagLayout1
jLabelID
JLabel jLabelID
jTextFieldNameSecInSegView
JTextField jTextFieldNameSecInSegView
jLabelEndPoint
JLabel jLabelEndPoint
jTextFieldStartPoint
JTextField jTextFieldStartPoint
jLabelStartPoint
JLabel jLabelStartPoint
jLabelParent
JLabel jLabelParent
jButtonCoords
JButton jButtonCoords
jButtonJump
JButton jButtonJump
jLabelSegLength
JLabel jLabelSegLength
jTextFieldSegLength
JTextField jTextFieldSegLength
jTextFieldEndPoint
JTextField jTextFieldEndPoint
jTextFieldParent
JTextField jTextFieldParent
gridBagLayout2
GridBagLayout gridBagLayout2
jLabelFractAlong
JLabel jLabelFractAlong
jLabelStartRadius
JLabel jLabelStartRadius
jTextFieldStartRadius
JTextField jTextFieldStartRadius
jTextFieldFractAlong
JTextField jTextFieldFractAlong
jLabelEndRadius
JLabel jLabelEndRadius
jTextFieldEndRadius
JTextField jTextFieldEndRadius
jLabelFiniteVol
JLabel jLabelFiniteVol
jComboBoxFiniteVolume
JComboBox jComboBoxFiniteVolume
jButtonUpdate
JButton jButtonUpdate
jButtonDelete
JButton jButtonDelete
jPanelOptions
JPanel jPanelOptions
jPanelMainOptions
JPanel jPanelMainOptions
jPanelUpdateOptions
JPanel jPanelUpdateOptions
jPanelOkCancel
JPanel jPanelOkCancel
borderLayout1
BorderLayout borderLayout1
jButtonCheckValid
JButton jButtonCheckValid
jPanelFunctions
JPanel jPanelFunctions
jLabelSectionName
JLabel jLabelSectionName
jTextFieldSectionsName
JTextField jTextFieldSectionsName
jLabelNumberIntDivisions
JLabel jLabelNumberIntDivisions
jTextFieldNumIntDivisions
JTextField jTextFieldNumIntDivisions
jLabelStartSecPoint
JLabel jLabelStartSecPoint
jTextFieldStartSecPOoint
JTextField jTextFieldStartSecPOoint
jLabelStartSecRadius
JLabel jLabelStartSecRadius
jTextFieldStartSecRadius
JTextField jTextFieldStartSecRadius
jButtonBiophys
JButton jButtonBiophys
jComboBoxFunctions
JComboBox jComboBoxFunctions
jLabelSegChildren
JLabel jLabelSegChildren
jRadioButtonNoMove
JRadioButton jRadioButtonNoMove
jRadioButtonTransChildren
JRadioButton jRadioButtonTransChildren
jRadioButtonRotTransChildren
JRadioButton jRadioButtonRotTransChildren
buttonGrpChildern
ButtonGroup buttonGrpChildern
logger
ClassLogger logger
fixedNumString
String fixedNumString
linearSeqString
String linearSeqString
cancelled
boolean cancelled
fixedValLabel
JLabel fixedValLabel
fixedValTextField
JTextField fixedValTextField
startValLabel
JLabel startValLabel
startValTextField
JTextField startValTextField
endValLabel
JLabel endValLabel
endValTextField
JTextField endValTextField
intervalValLabel
JLabel intervalValLabel
intervalValTextField
JTextField intervalValTextField
panel1
JPanel panel1
borderLayout1
BorderLayout borderLayout1
seqGen
SequenceGenerator seqGen
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jButtonOK
JButton jButtonOK
jLabelType
JLabel jLabelType
jLabelRequest
JLabel jLabelRequest
jComboBoxType
JComboBox jComboBoxType
jPanelVariables
JPanel jPanelVariables
gridLayout1
GridLayout gridLayout1
border1
Border border1
jPanel1
JPanel jPanel1
borderLayout2
BorderLayout borderLayout2
jPanelType
JPanel jPanelType
jPanelTop
JPanel jPanelTop
logger
ClassLogger logger
listModelNames
DefaultListModel listModelNames
cellGroupCheckBoxes
Hashtable<K,V> cellGroupCheckBoxes
netConnCheckBoxes
Hashtable<K,V> netConnCheckBoxes
inputCheckBoxes
Hashtable<K,V> inputCheckBoxes
plotCheckBoxes
Hashtable<K,V> plotCheckBoxes
project
Project project
updatingGUI
boolean updatingGUI
simConfigInfo
SimConfigInfo simConfigInfo
borderLayout1
BorderLayout borderLayout1
jPanelList
JPanel jPanelList
jPanelDescription
JPanel jPanelDescription
jPanelButtons
JPanel jPanelButtons
jButtonOK
JButton jButtonOK
jButtonEditDesc
JButton jButtonEditDesc
jButtonDelete
JButton jButtonDelete
jScrollPane1
JScrollPane jScrollPane1
jListNames
JList jListNames
borderLayout2
BorderLayout borderLayout2
jScrollPane2
JScrollPane jScrollPane2
jTextAreaDescription
JTextArea jTextAreaDescription
border1
Border border1
border2
Border border2
borderLayout3
BorderLayout borderLayout3
jButtonAdd
JButton jButtonAdd
jButtonHelp
JButton jButtonHelp
jPanelCheckBoxes
JPanel jPanelCheckBoxes
jPanelSimDur
JPanel jPanelSimDur
jLabelSimDur
JLabel jLabelSimDur
jTextFieldSimDur
JTextField jTextFieldSimDur
jLabelMs
JLabel jLabelMs
jLabelMpiConf
JLabel jLabelMpiConf
jComboBoxMpiConfs
JComboBox jComboBoxMpiConfs
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelMainString
JPanel jPanelMainString
borderLayout1
BorderLayout borderLayout1
jButtonClose
JButton jButtonClose
jEditorPaneMain
JEditorPane jEditorPaneMain
borderLayout2
BorderLayout borderLayout2
border1
Border border1
scroller
JScrollPane scroller
standalone
boolean standalone
fileUrl
URL fileUrl
initialText
String initialText
cancelled
boolean cancelled
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelFile
JPanel jPanelFile
borderLayout1
BorderLayout borderLayout1
jButtonClose
JButton jButtonClose
jButtonToggleHtmlSource
JButton jButtonToggleHtmlSource
jEditorPaneMain
JEditorPane jEditorPaneMain
borderLayout2
BorderLayout borderLayout2
border1
Border border1
scroller
JScrollPane scroller
standalone
boolean standalone
source
String source
fileUrl
URL fileUrl
logger
ClassLogger logger
textFieldsForParameters
Hashtable<K,V> textFieldsForParameters
project
Project project
toolTipText
ToolTipHelper toolTipText
cancelled
boolean cancelled
jPanelButtons
JPanel jPanelButtons
jPanelMain
JPanel jPanelMain
borderLayout1
BorderLayout borderLayout1
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelTop
JPanel jPanelTop
border1
Border border1
jPanelNames
JPanel jPanelNames
jLabelPlotReference
JLabel jLabelPlotReference
jTextFieldPlotReference
JTextField jTextFieldPlotReference
borderLayout4
BorderLayout borderLayout4
jLabelCellGroups
JLabel jLabelCellGroups
jComboBoxCellGroup
JComboBox jComboBoxCellGroup
jLabelCellNumber
JLabel jLabelCellNumber
jTextFieldCellNumber
JTextField jTextFieldCellNumber
jLabelValuePlotted
JLabel jLabelValuePlotted
jTextFieldValuePlotted
JTextField jTextFieldValuePlotted
jLabelMin
JLabel jLabelMin
jTextFieldMin
JTextField jTextFieldMin
jLabelMax
JLabel jLabelMax
jTextFieldMax
JTextField jTextFieldMax
jLabelSegment
JLabel jLabelSegment
jTextFieldSegmentId
JTextField jTextFieldSegmentId
jLabelGraphWin
JLabel jLabelGraphWin
jComboBoxGraphWin
JComboBox jComboBoxGraphWin
gridBagLayout1
GridBagLayout gridBagLayout1
jComboBoxKnownValues
JComboBox jComboBoxKnownValues
jLabelOr
JLabel jLabelOr
jLabelCellNum2
JLabel jLabelCellNum2
jLabelPlotSave
JLabel jLabelPlotSave
jComboBoxPlotSave
JComboBox jComboBoxPlotSave
logger
ClassLogger logger
allSims
SimulationsInfo allSims
cancelled
boolean cancelled
recentFiles
RecentFiles recentFiles
jMenuBarMainMenu
JMenuBar jMenuBarMainMenu
jMenuColumnsMain
JMenu jMenuColumnsMain
jMenuColumnsSub
Hashtable<K,V> jMenuColumnsSub
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelSelection
JPanel jPanelSelection
borderLayout1
BorderLayout borderLayout1
jButtonOpen
JButton jButtonOpen
jButtonCancel
JButton jButtonCancel
jButtonInfo
JButton jButtonInfo
jButtonRefresh
JButton jButtonRefresh
jButtonCompare
JButton jButtonCompare
gridLayout1
GridLayout gridLayout1
jScrollPaneMain
JScrollPane jScrollPaneMain
jTableSimulations
JTable jTableSimulations
jButtonDelete
JButton jButtonDelete
jButtonRename
JButton jButtonRename
subMenuNetConns
String subMenuNetConns
subMenuStimulations
String subMenuStimulations
subMenuCellMechanims
String subMenuCellMechanims
subMenuMorphSummaries
String subMenuMorphSummaries
logger
ClassLogger logger
controlledPanel
SimulationInterface controlledPanel
mySimulationDir
File mySimulationDir
activityMonitors
Hashtable<K,V> activityMonitors
view2Ds
ArrayList<E> view2Ds
project
Project project
startSimString
String startSimString
restartSimString
String restartSimString
numTimeSteps
int numTimeSteps
simulationTimer
Timer simulationTimer
startSim
long startSim
cellGroupsCheckBoxes
ArrayList<E> cellGroupsCheckBoxes
cellGroupsToUse
Hashtable<K,V> cellGroupsToUse
isiInfo
Hashtable<K,V> isiInfo
rerunValues
double[][] rerunValues
rerunCellItemRefs
String[] rerunCellItemRefs
- CellItem is a CellSegRef or SynapseRef...
currentCellItemRefs
ArrayList<E> currentCellItemRefs
standalone
boolean standalone
myCurrSimData
SimulationData myCurrSimData
thresholdForRun
float thresholdForRun
moreShown
boolean moreShown
jLabelVars
JLabel jLabelVars
jComboBoxVars
JComboBox jComboBoxVars
jPanelMain
JPanel jPanelMain
jPanelRun
JPanel jPanelRun
jPanelVars
JPanel jPanelVars
jPanelLoop
JPanel jPanelLoop
jLabelTimeStep
JLabel jLabelTimeStep
jTextFieldDelay
JFormattedTextField jTextFieldDelay
jButtonStart
JButton jButtonStart
jRunSlider
JSlider jRunSlider
jTextFieldSimulationTime
JTextField jTextFieldSimulationTime
jButtonStop
JButton jButtonStop
buttonGroupFileOrDB
ButtonGroup buttonGroupFileOrDB
flowLayout1
FlowLayout flowLayout1
border1
Border border1
flowLayout2
FlowLayout flowLayout2
jPanelScale
JPanel jPanelScale
jLabelHigh
JLabel jLabelHigh
buttonGroup
ButtonGroup buttonGroup
jButton2D
JButton jButton2D
jLabelV1
JLabel jLabelV1
jLabelV2
JLabel jLabelV2
jLabelV3
JLabel jLabelV3
jLabelV4
JLabel jLabelV4
jLabelV5
JLabel jLabelV5
jLabelV6
JLabel jLabelV6
jLabelV7
JLabel jLabelV7
jLabelV8
JLabel jLabelV8
jLabelV9
JLabel jLabelV9
jLabelV10
JLabel jLabelV10
jLabelV11
JLabel jLabelV11
jLabelV12
JLabel jLabelV12
jLabelV13
JLabel jLabelV13
jLabelV14
JLabel jLabelV14
jLabelV15
JLabel jLabelV15
jLabelV16
JLabel jLabelV16
jLabelLow
JLabel jLabelLow
border2
Border border2
jPanelOptions
JPanel jPanelOptions
jRadioButtonShadLinear
JRadioButton jRadioButtonShadLinear
jRadioButtonShadRainbow
JRadioButton jRadioButtonShadRainbow
jRadioButtonSpikesOnly
JRadioButton jRadioButtonSpikesOnly
jRadioButtonISIShading
JRadioButton jRadioButtonISIShading
jTextFieldSpikeThreshold
JFormattedTextField jTextFieldSpikeThreshold
jLabelMv
JLabel jLabelMv
borderLayout1
BorderLayout borderLayout1
jPanelSpiking2Options
JPanel jPanelSpiking2Options
jPanelSpikingInfo
JPanel jPanelSpikingInfo
jLabelSpikingThresh
JLabel jLabelSpikingThresh
jCheckBoxActivityMonitors
JCheckBox jCheckBoxActivityMonitors
jPanelNumbers
JPanel jPanelNumbers
jPanelExtras
JPanel jPanelExtras
jPanelMainOptions
JPanel jPanelMainOptions
jPanelCellsToUpdate
JPanel jPanelCellsToUpdate
jPanelListCellGroups
JPanel jPanelListCellGroups
jPanelOtherCells
JPanel jPanelOtherCells
jPanelShowMore
JPanel jPanelShowMore
jButtonShowMore
JButton jButtonShowMore
jCheckBoxLoop
JCheckBox jCheckBoxLoop
bgOtherCells
ButtonGroup bgOtherCells
jRadioButtonBlacken
JRadioButton jRadioButtonBlacken
jRadioButtonTransp
JRadioButton jRadioButtonTransp
jLabelFramesToSkip
JLabel jLabelFramesToSkip
jTextFieldFramesToSkip
JFormattedTextField jTextFieldFramesToSkip
jButtonOK
JButton jButtonOK
jButtonRefresh
JButton jButtonRefresh
jButtonRefreshRemote
JButton jButtonRefreshRemote
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jPanelScrool
JPanel jPanelScrool
jScrollPane1
JScrollPane jScrollPane1
tree
SimulationTree tree
jRadioButtonDate
JRadioButton jRadioButtonDate
jRadioButtonAlpha
JRadioButton jRadioButtonAlpha
bg
ButtonGroup bg
standalone
boolean standalone
simInfo
SimulationsInfo simInfo
logger
ClassLogger logger
project
Project project
controlledPanel
SimulationInterface controlledPanel
jPanelButtons
JPanel jPanelButtons
jPanelSlider
JPanel jPanelSlider
jPanelSliderX
JPanel jPanelSliderX
jPanelSliderY
JPanel jPanelSliderY
jPanelSliderZ
JPanel jPanelSliderZ
jPanelMoreOptions
JPanel jPanelMoreOptions
jSpin
JSpinner jSpin
spinMod
SpinnerNumberModel spinMod
jLabelSpin
JLabel jLabelSpin
jButtonClose
JButton jButtonClose
jButtonReset
JButton jButtonReset
jPanelMain
JPanel jPanelMain
jSliderX1
JSlider jSliderX1
jSliderX2
JSlider jSliderX2
jSliderY1
JSlider jSliderY1
jSliderY2
JSlider jSliderY2
jSliderZ1
JSlider jSliderZ1
jSliderZ2
JSlider jSliderZ2
fractStartX
float fractStartX
fractEndX
float fractEndX
fractStartY
float fractStartY
fractEndY
float fractEndY
fractStartZ
float fractStartZ
fractEndZ
float fractEndZ
enclosingBox
RectangularBox enclosingBox
cellsAlignedInY
Hashtable<K,V> cellsAlignedInY
standalone
boolean standalone
transparency
Appearance transparency
logger
ClassLogger logger
myCellChooser
CellChooser myCellChooser
tempIClamp
IClampSettings tempIClamp
tempRandSpike
RandomSpikeTrainSettings tempRandSpike
tempRandSpikeExt
RandomSpikeTrainExtSettings tempRandSpikeExt
tempIClampVariable
IClampVariableSettings tempIClampVariable
tempRandSpikeVar
RandomSpikeTrainVariableSettings tempRandSpikeVar
indSegChooser
IndividualSegments indSegChooser
gds
GroupDistributedSegments gds
chosenSegLocChooser
SegmentLocationChooser chosenSegLocChooser
project
Project project
cancelled
boolean cancelled
jPanelButtons
JPanel jPanelButtons
jPanelMain
JPanel jPanelMain
borderLayout1
BorderLayout borderLayout1
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelTop
JPanel jPanelTop
border1
Border border1
jPanelNames
JPanel jPanelNames
jLabelInputReference
JLabel jLabelInputReference
jTextFieldReference
JTextField jTextFieldReference
borderLayout4
BorderLayout borderLayout4
jLabelCellGroups
JLabel jLabelCellGroups
jComboBoxCellGroup
JComboBox jComboBoxCellGroup
jLabelCellNumber
JLabel jLabelCellNumber
jLabelLocation
JLabel jLabelLocation
jLabelType
JLabel jLabelType
jTextFieldCellNumber
JTextField jTextFieldCellNumber
jTextFieldSegmentId
JTextField jTextFieldSegmentId
gridBagLayout1
GridBagLayout gridBagLayout1
jButtonSegment
JButton jButtonSegment
jRadioButtonSingle
JRadioButton jRadioButtonSingle
jRadioButtonDistributed
JRadioButton jRadioButtonDistributed
jRadioButtonIClamp
JRadioButton jRadioButtonIClamp
jRadioButtonRandSpike
JRadioButton jRadioButtonRandSpike
jRadioButtonRandSpikeExt
JRadioButton jRadioButtonRandSpikeExt
jRadioButtonIClampVariable
JRadioButton jRadioButtonIClampVariable
jRadioButtonRandSpikeVar
JRadioButton jRadioButtonRandSpikeVar
jButtonLocationChange
JButton jButtonLocationChange
jButtonStimChange
JButton jButtonStimChange
jButtonCellChooserChange
JButton jButtonCellChooserChange
buttonGroupSegments
ButtonGroup buttonGroupSegments
buttonGroupStims
ButtonGroup buttonGroupStims
jTextFieldInfo
JTextField jTextFieldInfo
jTextFieldLocationInfo
JTextField jTextFieldLocationInfo
jLabelFraction
JLabel jLabelFraction
jTextFieldFractionAlong
JTextField jTextFieldFractionAlong
logger
ClassLogger logger
cancelled
boolean cancelled
borderLayout1
BorderLayout borderLayout1
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jButtonOK
JButton jButtonOK
jButtonMore
JButton jButtonMore
jPanelMain
JPanel jPanelMain
jPanelFeatures
JPanel jPanelFeatures
jPanelInfo
JPanel jPanelInfo
jCheckBoxFeatures
JCheckBox jCheckBoxFeatures
jTextAreaFeatures
JTextArea jTextAreaFeatures
jPanelDaughter
JPanel jPanelDaughter
jCheckBoxDaughter
JCheckBox jCheckBoxDaughter
jTextAreaDaughter
JTextArea jTextAreaDaughter
borderLayout2
BorderLayout borderLayout2
jTextAreaInfo
JTextArea jTextAreaInfo
logger
ClassLogger logger
mySynProps
SynapticProperties mySynProps
project
Project project
cancelled
boolean cancelled
panel1
JPanel panel1
borderLayout1
BorderLayout borderLayout1
jPanelMain
JPanel jPanelMain
jLabelSynapseType
JLabel jLabelSynapseType
jComboBoxSynapseType
JComboBox jComboBoxSynapseType
jLabelDelay
JLabel jLabelDelay
jTextFieldDelay
JTextField jTextFieldDelay
jPanelButtons
JPanel jPanelButtons
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
gridBagLayout1
GridBagLayout gridBagLayout1
jButtonDelay
JButton jButtonDelay
jLabelWeights
JLabel jLabelWeights
jTextFieldWeights
JTextField jTextFieldWeights
jButtonWeights
JButton jButtonWeights
jLabelThreshold
JLabel jLabelThreshold
jTextFieldThreshold
JTextField jTextFieldThreshold
logger
ClassLogger logger
currentSynapticProperties
SynapticProperties currentSynapticProperties
button
JButton button
project
Project project
myParent
Frame myParent
logger
ClassLogger logger
cancelled
boolean cancelled
jPanelMain
JPanel jPanelMain
chosenSynapticPropList
Vector<E> chosenSynapticPropList
toolTipText
ToolTipHelper toolTipText
connConds
ConnectivityConditions connConds
newConnMode
boolean newConnMode
apSpeed
float apSpeed
inhomoExp
EquationUnit inhomoExp
sourceRegionCheckBoxes
Vector<E> sourceRegionCheckBoxes
sourceRegions
Vector<E> sourceRegions
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelOKCancel
JPanel jPanelOKCancel
jPanelSourceInfo
JPanel jPanelSourceInfo
jPanelTargetInfo
JPanel jPanelTargetInfo
borderLayout1
BorderLayout borderLayout1
jComboBoxSource
JComboBox jComboBoxSource
jComboBoxTarget
JComboBox jComboBoxTarget
project
Project project
sourceComboString
String sourceComboString
targetComboString
String targetComboString
jLabelCellTypeSrc
JLabel jLabelCellTypeSrc
jTextFieldCellTypeSrc
JTextField jTextFieldCellTypeSrc
gridBagLayoutSrc
GridBagLayout gridBagLayoutSrc
jLabelAP
JLabel jLabelAP
jTextFieldAP
JTextField jTextFieldAP
jLabelAPunits
JLabel jLabelAPunits
jLabelInh
JLabel jLabelInh
jTextFieldInh
JTextField jTextFieldInh
jLabelCellTypeTrgt
JLabel jLabelCellTypeTrgt
jTextFieldCellTypeTrgt
JTextField jTextFieldCellTypeTrgt
gridBagLayoutTrgt
GridBagLayout gridBagLayoutTrgt
jPanelName
JPanel jPanelName
jPanelType
JPanel jPanelType
jPanelTop
JPanel jPanelTop
jLabelName
JLabel jLabelName
jLabelSynapseProperties
JLabel jLabelSynapseProperties
jTextFieldName
JTextField jTextFieldName
buttonGroupPreSynDistribution
ButtonGroup buttonGroupPreSynDistribution
jButtonSynPropsAdd
JButton jButtonSynPropsAdd
jPanelExtraParams
JPanel jPanelExtraParams
jPanelSynapseProperties
JPanel jPanelSynapseProperties
borderLayout2
BorderLayout borderLayout2
border1
Border border1
titledBorder1
TitledBorder titledBorder1
border2
Border border2
titledBorder2
TitledBorder titledBorder2
border3
Border border3
titledBorder3
TitledBorder titledBorder3
border4
Border border4
titledBorder4
TitledBorder titledBorder4
border5
Border border5
titledBorder5
TitledBorder titledBorder5
jTextFieldRandCloseNumber
JTextField jTextFieldRandCloseNumber
jPanelSourceTarget
JPanel jPanelSourceTarget
flowLayout1
FlowLayout flowLayout1
jPanelSrcArbours
JPanel jPanelSrcArbours
jPanelTgtArbours
JPanel jPanelTgtArbours
jPanelAP
JPanel jPanelAP
jPanelInh
JPanel jPanelInh
border8
Border border8
border9
Border border9
titledBorder8
TitledBorder titledBorder8
titledBorder9
TitledBorder titledBorder9
gridBagLayout1
GridBagLayout gridBagLayout1
border6
Border border6
titledBorder6
TitledBorder titledBorder6
jLabelAttempts
JLabel jLabelAttempts
jTextFieldAttempts
JTextField jTextFieldAttempts
jPanelConnConds
JPanel jPanelConnConds
border7
Border border7
titledBorder7
TitledBorder titledBorder7
jRadioButtonSrcToTrgt
JRadioButton jRadioButtonSrcToTrgt
jRadioButtonTrgtToSrc
JRadioButton jRadioButtonTrgtToSrc
buttonGroupSrcTargetDir
ButtonGroup buttonGroupSrcTargetDir
jPanelConnCondRadios
JPanel jPanelConnCondRadios
jPanelConnCondMaxTarget
JPanel jPanelConnCondMaxTarget
jLabelConnCondsNum
JLabel jLabelConnCondsNum
jPanelConnCondsNum
JPanel jPanelConnCondsNum
jTextFieldConnCondsNum
JTextField jTextFieldConnCondsNum
jButtonConnCondsNum
JButton jButtonConnCondsNum
jCheckBoxConnCondsUnique
JCheckBox jCheckBoxConnCondsUnique
jLabelConnCondsMaxTarget
JLabel jLabelConnCondsMaxTarget
jTextFieldConnCondsMaxTarget
JTextField jTextFieldConnCondsMaxTarget
jPanelConnCondsMaxTarget
JPanel jPanelConnCondsMaxTarget
gridBagLayout2
GridBagLayout gridBagLayout2
listModelSyns
DefaultListModel listModelSyns
jListSyns
JList jListSyns
scrollPaneSyns
JScrollPane scrollPaneSyns
jButtonSynPropsRemove
JButton jButtonSynPropsRemove
jButtonSynPropsEdit
JButton jButtonSynPropsEdit
border99
Border border99
titledBorder99
TitledBorder titledBorder99
jPanelConnCondsAutapses
JPanel jPanelConnCondsAutapses
jLabelConnCondsAutapses
JLabel jLabelConnCondsAutapses
jCheckBoxAutapses
JCheckBox jCheckBoxAutapses
|
Package ucl.physiol.neuroconstruct.gui.plotter |
logger
ClassLogger logger
currentPointNumber
int currentPointNumber
standAlone
boolean standAlone
dataSet
DataSet dataSet
panelMain
JPanel panelMain
borderLayout1
BorderLayout borderLayout1
jPanelButtons
JPanel jPanelButtons
jPanelMainEdit
JPanel jPanelMainEdit
jButtonOK
JButton jButtonOK
jButtonCancel
JButton jButtonCancel
jPanelDetails
JPanel jPanelDetails
jLabelRef
JLabel jLabelRef
jTextFieldRef
JTextField jTextFieldRef
jLabelNumber
JLabel jLabelNumber
jTextFieldNum
JTextField jTextFieldNum
jPanelEditor
JPanel jPanelEditor
jPanelMove
JPanel jPanelMove
jPanelParams
JPanel jPanelParams
inputPointNumber
IntegerInputField inputPointNumber
jButtonForward
JButton jButtonForward
jButtonBack
JButton jButtonBack
jLabelY
JLabel jLabelY
jLabelComment
JLabel jLabelComment
jLabelX
JLabel jLabelX
inputFieldComment
JTextField inputFieldComment
inputFieldYval
DoubleInputField inputFieldYval
inputFieldXval
DoubleInputField inputFieldXval
borderLayout3
BorderLayout borderLayout3
jButtonAdd
JButton jButtonAdd
jButtonDelete
JButton jButtonDelete
gridBagLayout1
GridBagLayout gridBagLayout1
gridBagLayout2
GridBagLayout gridBagLayout2
jButtonTop
JButton jButtonTop
jButtonBottom
JButton jButtonBottom
pointDisplay
JEditorPane pointDisplay
jPanelList
JPanel jPanelList
borderLayout4
BorderLayout borderLayout4
border1
Border border1
jLabelPointNum
JLabel jLabelPointNum
jButtonPlot
JButton jButtonPlot
gridBagLayout3
GridBagLayout gridBagLayout3
border2
Border border2
logger
ClassLogger logger
viewMode
String viewMode
showAxes
boolean showAxes
showAxisNumbering
boolean showAxisNumbering
showAxisTicks
boolean showAxisTicks
warnedAboutNaNInfinity
boolean warnedAboutNaNInfinity
keepDataSetColours
boolean keepDataSetColours
- If false, a graph of the same colour as an existing graph will be updated to a new colour
myRasterOptions
RasterOptions myRasterOptions
spikeOptions
SpikeAnalysisOptions spikeOptions
nextColour
int nextColour
fractionToAdd
double fractionToAdd
- Extra area around plots to ensure points don't go to edge...
maxXScaleValue
double maxXScaleValue
minXScaleValue
double minXScaleValue
maxYScaleValue
double maxYScaleValue
minYScaleValue
double minYScaleValue
mouseXval
int mouseXval
mouseYval
int mouseYval
doubleFormatterFull
DecimalFormat doubleFormatterFull
dataSets
DataSet[] dataSets
plotFrame
PlotterFrame plotFrame
selectingArea
boolean selectingArea
mouseSelectionStartX
double mouseSelectionStartX
mouseSelectionStartY
double mouseSelectionStartY
mouseSelectionFinishX
double mouseSelectionFinishX
mouseSelectionFinishY
double mouseSelectionFinishY
logger
ClassLogger logger
generatedDataSet
DataSet generatedDataSet
panel1
JPanel panel1
borderLayout1
BorderLayout borderLayout1
jPanelMain
JPanel jPanelMain
jPanelButtons
JPanel jPanelButtons
jButtonCancel
JButton jButtonCancel
jButtonOK
JButton jButtonOK
jLabelVariable
JLabel jLabelVariable
jTextFieldVariable
JTextField jTextFieldVariable
jLabelMaxVal
JLabel jLabelMaxVal
jTextFieldMax
JTextField jTextFieldMax
jLabelMinVal
JLabel jLabelMinVal
jTextFieldMin
JTextField jTextFieldMin
jLabelNumPoints
JLabel jLabelNumPoints
jTextFieldNumPoints
JTextField jTextFieldNumPoints
jLabelExpression
JLabel jLabelExpression
jTextFieldExpression
JTextField jTextFieldExpression
gridBagLayout1
GridBagLayout gridBagLayout1
standAlone
boolean standAlone
plotCanvas
PlotCanvas plotCanvas
formatMenuIndicator
String formatMenuIndicator
maxLengthDescInMenu
int maxLengthDescInMenu
plotFrameReference
String plotFrameReference
project
Project project
rasterised
boolean rasterised
recentFiles
RecentFiles recentFiles
problemDueToBarSpacing
boolean problemDueToBarSpacing
- Used to indicate if one of the plots is specified as bar chart, but can't
be drawn as such...
contentPane
JPanel contentPane
jMenuBarMainMenu
JMenuBar jMenuBarMainMenu
jMenuView
JMenu jMenuView
jMenuTools
JMenu jMenuTools
jMenuDifference
JMenuItem jMenuDifference
jMenuAverage
JMenuItem jMenuAverage
jMenuAddManual
JMenuItem jMenuAddManual
jMenuImportData
JMenuItem jMenuImportData
jMenuGenerateMatplotlib
JMenuItem jMenuGenerateMatplotlib
jMenuApAnalysis
JMenuItem jMenuApAnalysis
jMenuViewPointsOnly
JRadioButtonMenuItem jMenuViewPointsOnly
jMenuItemViewOrigin
JRadioButtonMenuItem jMenuItemViewOrigin
jMenuItemSelection
JRadioButtonMenuItem jMenuItemSelection
jMenuItemStacked
JRadioButtonMenuItem jMenuItemStacked
jMenuItemCustomView
JRadioButtonMenuItem jMenuItemCustomView
buttonGroupView
ButtonGroup buttonGroupView
borderLayout1
BorderLayout borderLayout1
jPanelMain
JPanel jPanelMain
borderLayout2
BorderLayout borderLayout2
jLabelStatusBar
JLabel jLabelStatusBar
jMenuPlotInfo
JMenu jMenuPlotInfo
jPanelCanvasHolder
JPanel jPanelCanvasHolder
borderLayout3
BorderLayout borderLayout3
border1
Border border1
jMenuOptions
JMenu jMenuOptions
jMenuItemClose
JMenuItem jMenuItemClose
jMenuItemShowAxes
JCheckBoxMenuItem jMenuItemShowAxes
jMenuItemShowAxisNums
JCheckBoxMenuItem jMenuItemShowAxisNums
jMenuItemShowAxisTicks
JCheckBoxMenuItem jMenuItemShowAxisTicks
jMenuItemAllOneColour
JMenuItem jMenuItemAllOneColour
jMenuItemRasterise
JCheckBoxMenuItem jMenuItemRasterise
siMenuItemEnable
boolean siMenuItemEnable
toolTipText
ToolTipHelper toolTipText
|
Package ucl.physiol.neuroconstruct.gui.view2d |
serialVersionUID: -5927916856156987118L
logger
ClassLogger logger
standAlone
boolean standAlone
positions
ArrayList<E> positions
borderLayout1
BorderLayout borderLayout1
jPanelInfo
JPanel jPanelInfo
jPanelButtons
JPanel jPanelButtons
jPanelMainCanvas
JPanel jPanelMainCanvas
jButtonClose
JButton jButtonClose
jLabelMain
JLabel jLabelMain
viewCanvas
ViewCanvas viewCanvas
cellGroup
String cellGroup
borderLayout2
BorderLayout borderLayout2
border1
Border border1
jPanelMain
JPanel jPanelMain
borderLayout3
BorderLayout borderLayout3
jLabelStatusBar
JLabel jLabelStatusBar
border2
Border border2
jPanelMainLabel
JPanel jPanelMainLabel
jPanelComboBox
JPanel jPanelComboBox
borderLayout4
BorderLayout borderLayout4
jComboBox1
JComboBox jComboBox1
jCheckBoxAxes
JCheckBox jCheckBoxAxes
logger
ClassLogger logger
cellPaintInfoList
Vector<E> cellPaintInfoList
viewingDir
View2DPlane.ViewingDirection viewingDir
minPointX2DMappedSpace
float minPointX2DMappedSpace
- There are 3 coord sets:
3DSpace: coords of the original points (cell positions in 3D)
2DMappedSpace: coords of the 2 dims of the 3d points which are relevant for this
ScreenSpace: coords as displayed on the screen (pixel/int coords)
maxPointX2DMappedSpace
float maxPointX2DMappedSpace
minPointY2DMappedSpace
float minPointY2DMappedSpace
maxPointY2DMappedSpace
float maxPointY2DMappedSpace
extraViewFactor
float extraViewFactor
circleWidth
int circleWidth
view2D
View2DPlane view2D
colorTolerance
int colorTolerance
- If the colours are within this tolerance, don't bother updating...
df
DecimalFormat df
logger
ClassLogger logger
minValColor
Color minValColor
maxValColor
Color maxValColor
minValue
float minValue
maxValue
float maxValue
logger
ClassLogger logger
|
Package ucl.physiol.neuroconstruct.hpc.condor |
logger
ClassLogger logger
standalone
boolean standalone
contentPane
JPanel contentPane
borderLayout1
BorderLayout borderLayout1
jPanelMain
JPanel jPanelMain
jPanelConsole
JPanel jPanelConsole
jPanelButtons
JPanel jPanelButtons
borderLayout2
BorderLayout borderLayout2
jScrollPane1
JScrollPane jScrollPane1
jTextAreaMain
JTextArea jTextAreaMain
borderLayout3
BorderLayout borderLayout3
border1
Border border1
jButtonCurrentJobs
JButton jButtonCurrentJobs
jButtonOther
JButton jButtonOther
jTextFieldOther
JTextField jTextFieldOther
jPanelMainButtons
JPanel jPanelMainButtons
jPanelOther
JPanel jPanelOther
borderLayout4
BorderLayout borderLayout4
jButtonHistory
JButton jButtonHistory
jButtonRemoveAll
JButton jButtonRemoveAll
jButtonStatus
JButton jButtonStatus
jPanelLastCommand
JPanel jPanelLastCommand
jLabelLastCommand
JLabel jLabelLastCommand
jTextAreaLastCommand
JTextArea jTextAreaLastCommand
panel1
JPanel panel1
panel2
JPanel panel2
insetsPanel1
JPanel insetsPanel1
insetsPanel2
JPanel insetsPanel2
insetsPanel3
JPanel insetsPanel3
button1
JButton button1
imageLabel
JLabel imageLabel
label1
JLabel label1
label2
JLabel label2
label3
JLabel label3
label4
JLabel label4
image1
ImageIcon image1
borderLayout1
BorderLayout borderLayout1
borderLayout2
BorderLayout borderLayout2
flowLayout1
FlowLayout flowLayout1
gridLayout1
GridLayout gridLayout1
product
String product
version
String version
copyright
String copyright
comments
String comments
|
Package ucl.physiol.neuroconstruct.hpc.mpi |
logger
ClassLogger logger
standalone
boolean standalone
workingDir
File workingDir
selectPrev
String selectPrev
contentPane
JPanel contentPane
borderLayout1
BorderLayout borderLayout1
jPanelMainSettings
JPanel jPanelMainSettings
jPanelMainScripting
JPanel jPanelMainScripting
jPanelConsole
JPanel jPanelConsole
jPanelButtons
JPanel jPanelButtons
borderLayout2
BorderLayout borderLayout2
jScrollPane1
JScrollPane jScrollPane1
jTextAreaMain
JTextArea jTextAreaMain
borderLayout3
BorderLayout borderLayout3
border1
Border border1
jButtonCurrentJobs
JButton jButtonCurrentJobs
jButtonOther
JButton jButtonOther
jTextFieldOther
JTextField jTextFieldOther
jPanelMainButtons
JPanel jPanelMainButtons
jPanelOther
JPanel jPanelOther
jPanelDD
JPanel jPanelDD
borderLayout4
BorderLayout borderLayout4
jButtonHistory
JButton jButtonHistory
jButtonRemoveAll
JButton jButtonRemoveAll
jButtonStatus
JButton jButtonStatus
jPanelLastCommand
JPanel jPanelLastCommand
jLabelLastCommand
JLabel jLabelLastCommand
jLabelRetVal
JLabel jLabelRetVal
jTextAreaLastCommand
JTextArea jTextAreaLastCommand
jTextAreaRetVal
JTextArea jTextAreaRetVal
jComboBoxPrevComms
JComboBox jComboBoxPrevComms
panel1
JPanel panel1
panel2
JPanel panel2
insetsPanel1
JPanel insetsPanel1
insetsPanel2
JPanel insetsPanel2
insetsPanel3
JPanel insetsPanel3
button1
JButton button1
imageLabel
JLabel imageLabel
label1
JLabel label1
label2
JLabel label2
label3
JLabel label3
label4
JLabel label4
image1
ImageIcon image1
borderLayout1
BorderLayout borderLayout1
borderLayout2
BorderLayout borderLayout2
flowLayout1
FlowLayout flowLayout1
gridLayout1
GridLayout gridLayout1
product
String product
version
String version
copyright
String copyright
comments
String comments
|
Package ucl.physiol.neuroconstruct.j3D |
viewedObject
Object viewedObject
- A description of the object viewed (or the object itself)
The imp of this should be sufficient so the super class constructor can be called
with what's returned from this e.g. new OneCell3DPanel(cell, activeProject, this);
logger
ClassLogger logger
standalone
boolean standalone
jPanelButtons
JPanel jPanelButtons
jPanelMain
JPanel jPanelMain
jButtonReturn
JButton jButtonReturn
borderLayout1
BorderLayout borderLayout1
logger
ClassLogger logger
project
Project project
scaleTG
TransformGroup scaleTG
viewTG
TransformGroup viewTG
prevValSlider
int prevValSlider
connectionsG
BranchGroup connectionsG
preferredSpikeValsEntered
boolean preferredSpikeValsEntered
spikeOptions
SpikeAnalysisOptions spikeOptions
defaultPlotLocation
String defaultPlotLocation
defaultAnalyse
String defaultAnalyse
analyseSpiking
String analyseSpiking
popSpikingHisto
String popSpikingHisto
popSpikesSync
String popSpikesSync
popRaster
String popRaster
popISIHisto
String popISIHisto
crossCorrel
String crossCorrel
vSimpFieldPot
String vSimpFieldPot
myCanvas3D
Canvas3D myCanvas3D
selectedCells
ArrayList<E> selectedCells
slicerFrame
SlicerFrame slicerFrame
toolTipText
ToolTipHelper toolTipText
- To improve performance, the segments are cached against SegmentName, for quick retrieval...
optimalScale
float optimalScale
simpleU
com.sun.j3d.utils.universe.SimpleUniverse simpleU
firstLineCellGroupComboBox
String firstLineCellGroupComboBox
firstLineCellNumberComboBox
String firstLineCellNumberComboBox
selectManyCellNumComboBox
String selectManyCellNumComboBox
selectAllCellNumComboBox
String selectAllCellNumComboBox
defaultSegmentBoxText
String defaultSegmentBoxText
lastViewingTransform3D
Transform3D lastViewingTransform3D
all3DCells
Hashtable<K,V> all3DCells
simRerunFrame
SimulationRerunFrame simRerunFrame
refillingCellNumberComboBox
boolean refillingCellNumberComboBox
mySimulationDir
File mySimulationDir
cached_lastCellRef
String cached_lastCellRef
cached_lastOneCell3D
OneCell3D cached_lastOneCell3D
containerFor3D
Container containerFor3D
simConfig
SimConfig simConfig
showFrame
boolean showFrame
jPanelControls
JPanel jPanelControls
jComboBoxCellGroup
JComboBox jComboBoxCellGroup
jComboBoxCellNum
JComboBox jComboBoxCellNum
jButtonPlotVoltage
JButton jButtonPlotVoltage
jButtonPlaySimulation
JButton jButtonPlaySimulation
jSliderViewDistance
JSlider jSliderViewDistance
jLabelZoom
JLabel jLabelZoom
jCheckBoxTransparent
JCheckBox jCheckBoxTransparent
jPanelSelection
JPanel jPanelSelection
jPanelViewOptions
JPanel jPanelViewOptions
jButtonSimInfo
JButton jButtonSimInfo
jButtonFind
JButton jButtonFind
jButtonDetach
JButton jButtonDetach
jButtonSlice
JButton jButtonSlice
jButtonNetInfo
JButton jButtonNetInfo
jPanelSimulation
JPanel jPanelSimulation
flowLayout1
FlowLayout flowLayout1
borderLayout1
BorderLayout borderLayout1
jComboBoxWherePlot
JComboBox jComboBoxWherePlot
border1
Border border1
titledBorder1
TitledBorder titledBorder1
jTextFieldSegment
JTextField jTextFieldSegment
jTextFieldSimName
JTextField jTextFieldSimName
jComboBoxAnalyse
JComboBox jComboBoxAnalyse
jLabelAnalyse
JLabel jLabelAnalyse
segmentHighlightMain
Color segmentHighlightMain
segmentHighlightSecondary
Color segmentHighlightSecondary
segmentHighlightNoGmax
Color segmentHighlightNoGmax
canvas3D
Canvas3D canvas3D
segmentSelector
SegmentSelector segmentSelector
initialising
boolean initialising
toolTipText
ToolTipHelper toolTipText
latestSelectedSegment
Segment latestSelectedSegment
sectionTypeButtons
HashMap<K,V> sectionTypeButtons
synLocRadioButtons
HashMap<K,V> synLocRadioButtons
synLocButtonGroup
ButtonGroup synLocButtonGroup
densMechRadioButtons
HashMap<K,V> densMechRadioButtons
densMechButtonGroup
ButtonGroup densMechButtonGroup
groupRadioButtons
HashMap<K,V> groupRadioButtons
groupButtonGroup
ButtonGroup groupButtonGroup
paramGroupButtonGroup
ButtonGroup paramGroupButtonGroup
jPanelControls
JPanel jPanelControls
borderLayout1
BorderLayout borderLayout1
jSliderViewDistance
JSlider jSliderViewDistance
viewTG
TransformGroup viewTG
simpleU
com.sun.j3d.utils.universe.SimpleUniverse simpleU
scaleTG
TransformGroup scaleTG
prevValSlider
int prevValSlider
project
Project project
origCell
Cell origCell
- The original morphology passed to the class
displayedCell
Cell displayedCell
- The morphology after possible projection to a simpler/simulator specific form
myParent
Frame myParent
containerFor3D
Container containerFor3D
optimalScale
float optimalScale
myOneCell3D
OneCell3D myOneCell3D
jLabelZoom
JLabel jLabelZoom
jComboBoxHighlight
JComboBox jComboBoxHighlight
jPanelColourControls
JPanel jPanelColourControls
jPanelMainControls
JPanel jPanelMainControls
borderLayout2
BorderLayout borderLayout2
jButtonEditGroups
JButton jButtonEditGroups
jButtonEditSynapses
JButton jButtonEditSynapses
jButtonEditChanMechs
JButton jButtonEditChanMechs
jButtonCellInfo
JButton jButtonCellInfo
jPanelExtraButton
JPanel jPanelExtraButton
jLabelInfo
JLabel jLabelInfo
jComboBoxView
JComboBox jComboBoxView
jButtonFind
JButton jButtonFind
jButtonDetach
JButton jButtonDetach
warningLabel1
JLabel warningLabel1
warningLabel2
JLabel warningLabel2
sectionChanMechInfo
JLabel sectionChanMechInfo
jButtonMoreInfo
JButton jButtonMoreInfo
jButtonBiophysInfo
JButton jButtonBiophysInfo
jButtonSomaInfo
JButton jButtonSomaInfo
|
Package ucl.physiol.neuroconstruct.mechanisms |
logger
ClassLogger logger
columnNames
String[] columnNames
allCellMechanisms
Vector<E> allCellMechanisms
|
Package ucl.physiol.neuroconstruct.neuroml |
|
Package ucl.physiol.neuroconstruct.neuroml.hdf5 |
|
Package ucl.physiol.neuroconstruct.neuron |
|
Package ucl.physiol.neuroconstruct.project |
serialVersionUID: -3868462712734389810L
logger
ClassLogger logger
columnNames
String[] columnNames
vectorNames
Vector<E> vectorNames
vectorSource
Vector<E> vectorSource
vectorTarget
Vector<E> vectorTarget
vectorSynapseList
Vector<E> vectorSynapseList
vectorSourceRegion
Vector<E> vectorSourceRegion
vectorConnConds
Vector<E> vectorConnConds
vectorApSpeed
Vector<E> vectorApSpeed
vectorInhExp
Vector<E> vectorInhExp
logger
ClassLogger logger
columnNames
String[] columnNames
vectorCellGroupNames
Vector<E> vectorCellGroupNames
vectorCellTypes
Vector<E> vectorCellTypes
vectorRegionNames
Vector<E> vectorRegionNames
vectorColours
Vector<E> vectorColours
vectorPackingAdapter
Vector<E> vectorPackingAdapter
vectorPriority
Vector<E> vectorPriority
serialVersionUID: -45357457456L
serialVersionUID: -646745486L
logger
ClassLogger logger
columnNames
String[] columnNames
allStims
Vector<E> allStims
serialVersionUID: -6949393265L
parameterName
String parameterName
parameterDescription
String parameterDescription
defaultValue
float defaultValue
value
float value
units
Units units
stringValue
String stringValue
defaultStringValue
String defaultStringValue
acceptableValues
Object[] acceptableValues
- String or Float array of valued it can take. Exception handling should be done in this
class, but its done when this is used elsewhere...
serialVersionUID: -2656949393L
description
String description
parameterList
InternalParameter[] parameterList
logger
ClassLogger logger
columnNames
String[] columnNames
vectorNames
Vector<E> vectorNames
vectorRegionObjects
Vector<E> vectorRegionObjects
vectorColours
Vector<E> vectorColours
logger
ClassLogger logger
columnNames
String[] columnNames
vectorNames
Vector<E> vectorNames
vectorSynapseList
Vector<E> vectorSynapseList
vectorSource
Vector<E> vectorSource
vectorTarget
Vector<E> vectorTarget
vectorSearchPattern
Vector<E> vectorSearchPattern
vectorMaxMin
Vector<E> vectorMaxMin
vectorConnConds
Vector<E> vectorConnConds
vectorAPSpeed
Vector<E> vectorAPSpeed
logger
ClassLogger logger
columnNames
String[] columnNames
allPlots
Vector<E> allPlots
serialVersionUID: -5457949393L
|
Package ucl.physiol.neuroconstruct.project.cellchoice |
|
Package ucl.physiol.neuroconstruct.project.packing |
|
Package ucl.physiol.neuroconstruct.project.segmentchoice |
|
Package ucl.physiol.neuroconstruct.psics |
|
Package ucl.physiol.neuroconstruct.pynn |
|
Package ucl.physiol.neuroconstruct.simulation |
logger
ClassLogger logger
minNumberColumns
int minNumberColumns
allColumns
Vector<E> allColumns
columnsShown
Vector<E> columnsShown
simDataObjs
Vector<E> simDataObjs
extraColumns
Vector<E> extraColumns
simulationsDir
File simulationsDir
pf
ProcessFeedback pf
dataInSims
TreeMap<K,V> dataInSims
treeModelListeners
ArrayList<E> treeModelListeners
listStyle
SimulationsInfo.ListStyle listStyle
cellGroupName
String cellGroupName
simRef
String simRef
cellGroupName
String cellGroupName
simRef
String simRef
index
int index
info
String info
logger
ClassLogger logger
popupOneSim
JPopupMenu popupOneSim
popupCG
JPopupMenu popupCG
popupOneDataStore
JPopupMenu popupOneDataStore
mi
JMenuItem mi
PLOT
String PLOT
COLOURED_BY_CELL_GROUP
String COLOURED_BY_CELL_GROUP
PLOT_IN
String PLOT_IN
PLOT_ALL
String PLOT_ALL
PLOT_ALL_IN
String PLOT_ALL_IN
PLOT_ALL_VOLTS
String PLOT_ALL_VOLTS
PLOT_NON_VOLTS
String PLOT_NON_VOLTS
PLOT_SEPARATE_CG_VAR_ALL
String PLOT_SEPARATE_CG_VAR_ALL
PLOT_SEPARATE_CG_VAR_SEL
String PLOT_SEPARATE_CG_VAR_SEL
PLOT_SEPARATE_VAR
String PLOT_SEPARATE_VAR
SIM_SUMMARY
String SIM_SUMMARY
SIM_INFO
String SIM_INFO
|
Package ucl.physiol.neuroconstruct.utils |
serialVersionUID: -2523254286734506739L
distributionType
int distributionType
numberType
int numberType
fixedNum
float fixedNum
max
float max
min
float min
mean
float mean
stdDev
float stdDev
serialVersionUID: -566478567883676739L
inhomoExpr
EquationUnit inhomoExpr
somaToSoma
boolean somaToSoma
|
Package ucl.physiol.neuroconstruct.utils.equation |
serialVersionUID: -7167676767444L
name
String name
value
double value
serialVersionUID: 876768226452L
serialVersionUID: -612672676548L
first
EquationUnit first
second
EquationUnit second
operation
char operation
serialVersionUID: -8761786276L
value
double value
serialVersionUID: -5346073251568817855L
name
String name
serialVersionUID: -97991769713623L
internalEqn
EquationUnit internalEqn
serialVersionUID: -47164166L
|
Package ucl.physiol.neuroconstruct.utils.equation.functions |
serialVersionUID: -5473567L
serialVersionUID: -464585678567L
serialVersionUID: -53445615634523L
serialVersionUID: -24624566896786L
serialVersionUID: -765989678L
serialVersionUID: -66653452445563623L
serialVersionUID: -97991769713623L
serialVersionUID: -232279272442763L
serialVersionUID: -782627684L
|
Package ucl.physiol.neuroconstruct.utils.units |