ucl.physiol.neuroconstruct.genesis
Class GenesisSettings

java.lang.Object
  ucl.physiol.neuroconstruct.genesis.GenesisSettings

public class GenesisSettings
extends Object

The general parameters needed for GENESIS simulations

Author:

Padraig Gleeson

Nested Class Summary

static class

GenesisSettings.GraphicsMode

Constructor Summary

GenesisSettings()

Method Summary

float	getAbsRefractSpikegen()
GenesisSettings.GraphicsMode	getGraphicsMode()
String	getNativeBlock(ScriptLocation ncl)
Hashtable<Integer,String>	getNativeBlocks() Deprecated.
NumericalMethod	getNumMethod()
float	getReloadSimAfterSecs()
int	getUnitSystemToUse()
boolean	isCopySimFiles()
boolean	isGenerateComments()
boolean	isMooseCompatMode()
boolean	isPhysiologicalUnits()
boolean	isShowShapePlot()
boolean	isShowVoltPlot()
boolean	isSIUnits()
boolean	isSymmetricCompartments()
void	setAbsRefractSpikegen(float absRefractSpikegen)
void	setCopySimFiles(boolean copySimFiles)
void	setGenerateComments(boolean generateComments)
void	setGraphicsMode(boolean graphicsMode) Deprecated.
void	setGraphicsMode(GenesisSettings.GraphicsMode graphicsMode)
void	setMooseCompatMode(boolean mooseCompatMode)
void	setNativeBlock(ScriptLocation ncl, String text)
void	setNativeBlocks(Hashtable<Integer,String> nb) Deprecated.
void	setNoConsole()
void	setNumMethod(NumericalMethod numMethod)
void	setReloadSimAfterSecs(float reloadSimAfterSecs)
void	setShowShapePlot(boolean showShapePlot)
void	setShowVoltPlot(boolean showVoltPlot)
void	setSymmetricCompartments(boolean symmetricCompartments)
void	setTextAfterCellCreation(String textAfterCellCreation) Deprecated.
void	setTextBeforeCellCreation(String textBeforeCellCreation) Deprecated.
void	setUnitSystemToUse(int unitSystemToUse)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenesisSettings

public GenesisSettings()

Method Detail

getNativeBlocks

public Hashtable<Integer,String> getNativeBlocks()

Deprecated.

Should only be used by XMLEncoder, hence use of deprecated

setNativeBlocks

public void setNativeBlocks(Hashtable<Integer,String> nb)

Deprecated.

Should only be used by XMLEncoder, hence use of deprecated

getNativeBlock

public String getNativeBlock(ScriptLocation ncl)

setNativeBlock

public void setNativeBlock(ScriptLocation ncl,
                           String text)

getReloadSimAfterSecs

public float getReloadSimAfterSecs()

setReloadSimAfterSecs

public void setReloadSimAfterSecs(float reloadSimAfterSecs)

getAbsRefractSpikegen

public float getAbsRefractSpikegen()

setAbsRefractSpikegen

public void setAbsRefractSpikegen(float absRefractSpikegen)

setTextAfterCellCreation

public void setTextAfterCellCreation(String textAfterCellCreation)

Deprecated.

Used to ensure compatibility with old method of code blocks...

setTextBeforeCellCreation

public void setTextBeforeCellCreation(String textBeforeCellCreation)

Deprecated.

Used to ensure compatibility with old method of code blocks...

isSymmetricCompartments

public boolean isSymmetricCompartments()

setSymmetricCompartments

public void setSymmetricCompartments(boolean symmetricCompartments)

getUnitSystemToUse

public int getUnitSystemToUse()

isSIUnits

public boolean isSIUnits()

isPhysiologicalUnits

public boolean isPhysiologicalUnits()

isMooseCompatMode

public boolean isMooseCompatMode()

setMooseCompatMode

public void setMooseCompatMode(boolean mooseCompatMode)

isShowShapePlot

public boolean isShowShapePlot()

isShowVoltPlot

public boolean isShowVoltPlot()

setShowVoltPlot

public void setShowVoltPlot(boolean showVoltPlot)

setShowShapePlot

public void setShowShapePlot(boolean showShapePlot)

isGenerateComments

public boolean isGenerateComments()

setGenerateComments

public void setGenerateComments(boolean generateComments)

getNumMethod

public NumericalMethod getNumMethod()

setNumMethod

public void setNumMethod(NumericalMethod numMethod)

setUnitSystemToUse

public void setUnitSystemToUse(int unitSystemToUse)

setGraphicsMode

public void setGraphicsMode(boolean graphicsMode)

Deprecated.

setNoConsole

public void setNoConsole()

setGraphicsMode

public void setGraphicsMode(GenesisSettings.GraphicsMode graphicsMode)

getGraphicsMode

public GenesisSettings.GraphicsMode getGraphicsMode()

isCopySimFiles

public boolean isCopySimFiles()

setCopySimFiles

public void setCopySimFiles(boolean copySimFiles)