ucl.physiol.neuroconstruct.mechanisms
Class TabHHMechanism

java.lang.Object
  ucl.physiol.neuroconstruct.mechanisms.CellMechanism
      ucl.physiol.neuroconstruct.mechanisms.AbstractedCellMechanism
          ucl.physiol.neuroconstruct.mechanisms.DistMembraneMechanism
              ucl.physiol.neuroconstruct.mechanisms.TabHHMechanism

Deprecated. Use ChannelML instead...

public class TabHHMechanism
extends DistMembraneMechanism

Cell Mechanism representing a HH channel on the membrane, implemented using tabchannel in GENESIS

Author:

Padraig Gleeson

Field Summary

static String	AAX Deprecated.
static String	AAX_DESC Deprecated.
static String	AAY Deprecated.
static String	AAY_DESC Deprecated.
static String	ABX Deprecated.
static String	ABX_DESC Deprecated.
static String	ABY Deprecated.
static String	ABY_DESC Deprecated.
static String	ACTIV_STATE_VAR_POWER Deprecated.
static String	ACX Deprecated.
static String	ACX_DESC Deprecated.
static String	ACY Deprecated.
static String	ACY_DESC Deprecated.
static String	ADX Deprecated.
static String	ADX_DESC Deprecated.
static String	ADY Deprecated.
static String	ADY_DESC Deprecated.
static String	AFX Deprecated.
static String	AFX_DESC Deprecated.
static String	AFY Deprecated.
static String	AFY_DESC Deprecated.
static String	BAX Deprecated.
static String	BAX_DESC Deprecated.
static String	BAY Deprecated.
static String	BAY_DESC Deprecated.
static String	BBX Deprecated.
static String	BBX_DESC Deprecated.
static String	BBY Deprecated.
static String	BBY_DESC Deprecated.
static String	BCX Deprecated.
static String	BCX_DESC Deprecated.
static String	BCY Deprecated.
static String	BCY_DESC Deprecated.
static String	BDX Deprecated.
static String	BDX_DESC Deprecated.
static String	BDY Deprecated.
static String	BDY_DESC Deprecated.
static String	BFX Deprecated.
static String	BFX_DESC Deprecated.
static String	BFY Deprecated.
static String	BFY_DESC Deprecated.
static String	EXP_TEMP Deprecated.
static String	EXP_TEMP_DESC Deprecated.
static String	INACTIV_STATE_VAR_POWER Deprecated.
static String	ION_SPECIES Deprecated.
static String	LINOIDAL_CONV_FACTOR Deprecated.
static String	LINOIDAL_CONV_FACTOR_DESC Deprecated.
static String	REV_POTENTIAL Deprecated.

Fields inherited from class ucl.physiol.neuroconstruct.mechanisms.DistMembraneMechanism

COND_DENSITY, COND_DENSITY_DESC

Fields inherited from class ucl.physiol.neuroconstruct.mechanisms.CellMechanism

ABSTRACTED_CELL_MECHANISM, CHANNEL_MECHANISM, CHANNELML_BASED_CELL_MECHANISM, description, FILE_BASED_CELL_MECHANISM, GAP_JUNCTION, instanceName, ION_CONCENTRATION, mechanismModel, mechanismType, NEUROML2_ABSTRACT_CELL, NEUROML2_BASED_CELL_MECHANISM, NEUROML2_ION_CHANNEL, POINT_PROCESS, SBML_BASED_CELL_MECHANISM, SBML_MECHANISM, SYNAPTIC_MECHANISM

Constructor Summary

TabHHMechanism()
Deprecated.

Method Summary

Object	clone() Deprecated. To ensure the base classes clone the object properly
static void	main(String[] args) Deprecated.
boolean	setParameter(String parameterName, float parameterValue) Deprecated. Sub classes should know what the parameters mean, and so this function needs should be overridden to check values

Methods inherited from class ucl.physiol.neuroconstruct.mechanisms.AbstractedCellMechanism

addNewParameter, createImplementationFile, getDefaultInstanceName, getMechanismImpls, getMechanismModelAndSims, getParameter, getParameterUnits, getPhysicalParameterList, getPlotInfoFile, initialise, parameterExists, printDetails, setDefaultInstanceName, setMechanismImpls, setParameterDefault, setPhysicalParameterList, setPlotInfoFile, specifyNewImplFile, toString

Methods inherited from class ucl.physiol.neuroconstruct.mechanisms.CellMechanism

getDescription, getInstanceName, getMechanismModel, getMechanismType, isChannelMechanism, isGapJunctionMechanism, isIonConcMechanism, isPointProcess, isSynapticMechanism, setDescription, setInstanceName, setMechanismModel, setMechanismType

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

REV_POTENTIAL

public static final String REV_POTENTIAL

Deprecated.

See Also:

Constant Field Values

ION_SPECIES

public static final String ION_SPECIES

Deprecated.

See Also:

Constant Field Values

ACTIV_STATE_VAR_POWER

public static final String ACTIV_STATE_VAR_POWER

Deprecated.

See Also:

Constant Field Values

INACTIV_STATE_VAR_POWER

public static final String INACTIV_STATE_VAR_POWER

Deprecated.

See Also:

Constant Field Values

AAX

public static final String AAX

Deprecated.

See Also:

Constant Field Values

AAX_DESC

public static final String AAX_DESC

Deprecated.

See Also:

Constant Field Values

ABX

public static final String ABX

Deprecated.

See Also:

Constant Field Values

ABX_DESC

public static final String ABX_DESC

Deprecated.

See Also:

Constant Field Values

ACX

public static final String ACX

Deprecated.

See Also:

Constant Field Values

ACX_DESC

public static final String ACX_DESC

Deprecated.

See Also:

Constant Field Values

ADX

public static final String ADX

Deprecated.

See Also:

Constant Field Values

ADX_DESC

public static final String ADX_DESC

Deprecated.

See Also:

Constant Field Values

AFX

public static final String AFX

Deprecated.

See Also:

Constant Field Values

AFX_DESC

public static final String AFX_DESC

Deprecated.

See Also:

Constant Field Values

BAX

public static final String BAX

Deprecated.

See Also:

Constant Field Values

BAX_DESC

public static final String BAX_DESC

Deprecated.

See Also:

Constant Field Values

BBX

public static final String BBX

Deprecated.

See Also:

Constant Field Values

BBX_DESC

public static final String BBX_DESC

Deprecated.

See Also:

Constant Field Values

BCX

public static final String BCX

Deprecated.

See Also:

Constant Field Values

BCX_DESC

public static final String BCX_DESC

Deprecated.

See Also:

Constant Field Values

BDX

public static final String BDX

Deprecated.

See Also:

Constant Field Values

BDX_DESC

public static final String BDX_DESC

Deprecated.

See Also:

Constant Field Values

BFX

public static final String BFX

Deprecated.

See Also:

Constant Field Values

BFX_DESC

public static final String BFX_DESC

Deprecated.

See Also:

Constant Field Values

AAY

public static final String AAY

Deprecated.

See Also:

Constant Field Values

AAY_DESC

public static final String AAY_DESC

Deprecated.

See Also:

Constant Field Values

ABY

public static final String ABY

Deprecated.

See Also:

Constant Field Values

ABY_DESC

public static final String ABY_DESC

Deprecated.

See Also:

Constant Field Values

ACY

public static final String ACY

Deprecated.

See Also:

Constant Field Values

ACY_DESC

public static final String ACY_DESC

Deprecated.

See Also:

Constant Field Values

ADY

public static final String ADY

Deprecated.

See Also:

Constant Field Values

ADY_DESC

public static final String ADY_DESC

Deprecated.

See Also:

Constant Field Values

AFY

public static final String AFY

Deprecated.

See Also:

Constant Field Values

AFY_DESC

public static final String AFY_DESC

Deprecated.

See Also:

Constant Field Values

BAY

public static final String BAY

Deprecated.

See Also:

Constant Field Values

BAY_DESC

public static final String BAY_DESC

Deprecated.

See Also:

Constant Field Values

BBY

public static final String BBY

Deprecated.

See Also:

Constant Field Values

BBY_DESC

public static final String BBY_DESC

Deprecated.

See Also:

Constant Field Values

BCY

public static final String BCY

Deprecated.

See Also:

Constant Field Values

BCY_DESC

public static final String BCY_DESC

Deprecated.

See Also:

Constant Field Values

BDY

public static final String BDY

Deprecated.

See Also:

Constant Field Values

BDY_DESC

public static final String BDY_DESC

Deprecated.

See Also:

Constant Field Values

BFY

public static final String BFY

Deprecated.

See Also:

Constant Field Values

BFY_DESC

public static final String BFY_DESC

Deprecated.

See Also:

Constant Field Values

LINOIDAL_CONV_FACTOR

public static final String LINOIDAL_CONV_FACTOR

Deprecated.

See Also:

Constant Field Values

LINOIDAL_CONV_FACTOR_DESC

public static final String LINOIDAL_CONV_FACTOR_DESC

Deprecated.

See Also:

Constant Field Values

EXP_TEMP

public static final String EXP_TEMP

Deprecated.

See Also:

Constant Field Values

EXP_TEMP_DESC

public static final String EXP_TEMP_DESC

Deprecated.

See Also:

Constant Field Values

Constructor Detail

TabHHMechanism

public TabHHMechanism()

Deprecated.

Method Detail

setParameter

public boolean setParameter(String parameterName,
                            float parameterValue)
                     throws CellMechanismException

Deprecated.

Description copied from class: AbstractedCellMechanism

Sub classes should know what the parameters mean, and so this function needs should be overridden to check values

Overrides:

setParameter in class DistMembraneMechanism

Throws:

CellMechanismException

clone

public Object clone()

Deprecated.

Description copied from class: AbstractedCellMechanism

To ensure the base classes clone the object properly

Specified by:

clone in class AbstractedCellMechanism

main

public static void main(String[] args)

Deprecated.