ucl.physiol.neuroconstruct.mechanisms
Class TabHHMechanism

java.lang.Object
  extended by ucl.physiol.neuroconstruct.mechanisms.CellMechanism
      extended by ucl.physiol.neuroconstruct.mechanisms.AbstractedCellMechanism
          extended by ucl.physiol.neuroconstruct.mechanisms.DistMembraneMechanism
              extended by ucl.physiol.neuroconstruct.mechanisms.TabHHMechanism

Deprecated. Use ChannelML instead...

public class TabHHMechanism
extends DistMembraneMechanism

Cell Mechanism representing a HH channel on the membrane, implemented using tabchannel in GENESIS

Author:
Padraig Gleeson

Field Summary
static String AAX
          Deprecated.  
static String AAX_DESC
          Deprecated.  
static String AAY
          Deprecated.  
static String AAY_DESC
          Deprecated.  
static String ABX
          Deprecated.  
static String ABX_DESC
          Deprecated.  
static String ABY
          Deprecated.  
static String ABY_DESC
          Deprecated.  
static String ACTIV_STATE_VAR_POWER
          Deprecated.  
static String ACX
          Deprecated.  
static String ACX_DESC
          Deprecated.  
static String ACY
          Deprecated.  
static String ACY_DESC
          Deprecated.  
static String ADX
          Deprecated.  
static String ADX_DESC
          Deprecated.  
static String ADY
          Deprecated.  
static String ADY_DESC
          Deprecated.  
static String AFX
          Deprecated.  
static String AFX_DESC
          Deprecated.  
static String AFY
          Deprecated.  
static String AFY_DESC
          Deprecated.  
static String BAX
          Deprecated.  
static String BAX_DESC
          Deprecated.  
static String BAY
          Deprecated.  
static String BAY_DESC
          Deprecated.  
static String BBX
          Deprecated.  
static String BBX_DESC
          Deprecated.  
static String BBY
          Deprecated.  
static String BBY_DESC
          Deprecated.  
static String BCX
          Deprecated.  
static String BCX_DESC
          Deprecated.  
static String BCY
          Deprecated.  
static String BCY_DESC
          Deprecated.  
static String BDX
          Deprecated.  
static String BDX_DESC
          Deprecated.  
static String BDY
          Deprecated.  
static String BDY_DESC
          Deprecated.  
static String BFX
          Deprecated.  
static String BFX_DESC
          Deprecated.  
static String BFY
          Deprecated.  
static String BFY_DESC
          Deprecated.  
static String EXP_TEMP
          Deprecated.  
static String EXP_TEMP_DESC
          Deprecated.  
static String INACTIV_STATE_VAR_POWER
          Deprecated.  
static String ION_SPECIES
          Deprecated.  
static String LINOIDAL_CONV_FACTOR
          Deprecated.  
static String LINOIDAL_CONV_FACTOR_DESC
          Deprecated.  
static String REV_POTENTIAL
          Deprecated.  
 
Fields inherited from class ucl.physiol.neuroconstruct.mechanisms.DistMembraneMechanism
COND_DENSITY, COND_DENSITY_DESC
 
Fields inherited from class ucl.physiol.neuroconstruct.mechanisms.CellMechanism
ABSTRACTED_CELL_MECHANISM, CHANNEL_MECHANISM, CHANNELML_BASED_CELL_MECHANISM, description, FILE_BASED_CELL_MECHANISM, GAP_JUNCTION, instanceName, ION_CONCENTRATION, mechanismModel, mechanismType, NEUROML2_ABSTRACT_CELL, NEUROML2_BASED_CELL_MECHANISM, NEUROML2_ION_CHANNEL, POINT_PROCESS, SBML_BASED_CELL_MECHANISM, SBML_MECHANISM, SYNAPTIC_MECHANISM
 
Constructor Summary
TabHHMechanism()
          Deprecated.  
 
Method Summary
 Object clone()
          Deprecated. To ensure the base classes clone the object properly
static void main(String[] args)
          Deprecated.  
 boolean setParameter(String parameterName, float parameterValue)
          Deprecated. Sub classes should know what the parameters mean, and so this function needs should be overridden to check values
 
Methods inherited from class ucl.physiol.neuroconstruct.mechanisms.AbstractedCellMechanism
addNewParameter, createImplementationFile, getDefaultInstanceName, getMechanismImpls, getMechanismModelAndSims, getParameter, getParameterUnits, getPhysicalParameterList, getPlotInfoFile, initialise, parameterExists, printDetails, setDefaultInstanceName, setMechanismImpls, setParameterDefault, setPhysicalParameterList, setPlotInfoFile, specifyNewImplFile, toString
 
Methods inherited from class ucl.physiol.neuroconstruct.mechanisms.CellMechanism
getDescription, getInstanceName, getMechanismModel, getMechanismType, isChannelMechanism, isGapJunctionMechanism, isIonConcMechanism, isPointProcess, isSynapticMechanism, setDescription, setInstanceName, setMechanismModel, setMechanismType
 
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

REV_POTENTIAL

public static final String REV_POTENTIAL
Deprecated. 
See Also:
Constant Field Values

ION_SPECIES

public static final String ION_SPECIES
Deprecated. 
See Also:
Constant Field Values

ACTIV_STATE_VAR_POWER

public static final String ACTIV_STATE_VAR_POWER
Deprecated. 
See Also:
Constant Field Values

INACTIV_STATE_VAR_POWER

public static final String INACTIV_STATE_VAR_POWER
Deprecated. 
See Also:
Constant Field Values

AAX

public static final String AAX
Deprecated. 
See Also:
Constant Field Values

AAX_DESC

public static final String AAX_DESC
Deprecated. 
See Also:
Constant Field Values

ABX

public static final String ABX
Deprecated. 
See Also:
Constant Field Values

ABX_DESC

public static final String ABX_DESC
Deprecated. 
See Also:
Constant Field Values

ACX

public static final String ACX
Deprecated. 
See Also:
Constant Field Values

ACX_DESC

public static final String ACX_DESC
Deprecated. 
See Also:
Constant Field Values

ADX

public static final String ADX
Deprecated. 
See Also:
Constant Field Values

ADX_DESC

public static final String ADX_DESC
Deprecated. 
See Also:
Constant Field Values

AFX

public static final String AFX
Deprecated. 
See Also:
Constant Field Values

AFX_DESC

public static final String AFX_DESC
Deprecated. 
See Also:
Constant Field Values

BAX

public static final String BAX
Deprecated. 
See Also:
Constant Field Values

BAX_DESC

public static final String BAX_DESC
Deprecated. 
See Also:
Constant Field Values

BBX

public static final String BBX
Deprecated. 
See Also:
Constant Field Values

BBX_DESC

public static final String BBX_DESC
Deprecated. 
See Also:
Constant Field Values

BCX

public static final String BCX
Deprecated. 
See Also:
Constant Field Values

BCX_DESC

public static final String BCX_DESC
Deprecated. 
See Also:
Constant Field Values

BDX

public static final String BDX
Deprecated. 
See Also:
Constant Field Values

BDX_DESC

public static final String BDX_DESC
Deprecated. 
See Also:
Constant Field Values

BFX

public static final String BFX
Deprecated. 
See Also:
Constant Field Values

BFX_DESC

public static final String BFX_DESC
Deprecated. 
See Also:
Constant Field Values

AAY

public static final String AAY
Deprecated. 
See Also:
Constant Field Values

AAY_DESC

public static final String AAY_DESC
Deprecated. 
See Also:
Constant Field Values

ABY

public static final String ABY
Deprecated. 
See Also:
Constant Field Values

ABY_DESC

public static final String ABY_DESC
Deprecated. 
See Also:
Constant Field Values

ACY

public static final String ACY
Deprecated. 
See Also:
Constant Field Values

ACY_DESC

public static final String ACY_DESC
Deprecated. 
See Also:
Constant Field Values

ADY

public static final String ADY
Deprecated. 
See Also:
Constant Field Values

ADY_DESC

public static final String ADY_DESC
Deprecated. 
See Also:
Constant Field Values

AFY

public static final String AFY
Deprecated. 
See Also:
Constant Field Values

AFY_DESC

public static final String AFY_DESC
Deprecated. 
See Also:
Constant Field Values

BAY

public static final String BAY
Deprecated. 
See Also:
Constant Field Values

BAY_DESC

public static final String BAY_DESC
Deprecated. 
See Also:
Constant Field Values

BBY

public static final String BBY
Deprecated. 
See Also:
Constant Field Values

BBY_DESC

public static final String BBY_DESC
Deprecated. 
See Also:
Constant Field Values

BCY

public static final String BCY
Deprecated. 
See Also:
Constant Field Values

BCY_DESC

public static final String BCY_DESC
Deprecated. 
See Also:
Constant Field Values

BDY

public static final String BDY
Deprecated. 
See Also:
Constant Field Values

BDY_DESC

public static final String BDY_DESC
Deprecated. 
See Also:
Constant Field Values

BFY

public static final String BFY
Deprecated. 
See Also:
Constant Field Values

BFY_DESC

public static final String BFY_DESC
Deprecated. 
See Also:
Constant Field Values

LINOIDAL_CONV_FACTOR

public static final String LINOIDAL_CONV_FACTOR
Deprecated. 
See Also:
Constant Field Values

LINOIDAL_CONV_FACTOR_DESC

public static final String LINOIDAL_CONV_FACTOR_DESC
Deprecated. 
See Also:
Constant Field Values

EXP_TEMP

public static final String EXP_TEMP
Deprecated. 
See Also:
Constant Field Values

EXP_TEMP_DESC

public static final String EXP_TEMP_DESC
Deprecated. 
See Also:
Constant Field Values
Constructor Detail

TabHHMechanism

public TabHHMechanism()
Deprecated. 
Method Detail

setParameter

public boolean setParameter(String parameterName,
                            float parameterValue)
                     throws CellMechanismException
Deprecated. 
Description copied from class: AbstractedCellMechanism
Sub classes should know what the parameters mean, and so this function needs should be overridden to check values

Overrides:
setParameter in class DistMembraneMechanism
Throws:
CellMechanismException

clone

public Object clone()
Deprecated. 
Description copied from class: AbstractedCellMechanism
To ensure the base classes clone the object properly

Specified by:
clone in class AbstractedCellMechanism

main

public static void main(String[] args)
Deprecated.