ucl.physiol.neuroconstruct.project
Class GeneratedCellPositions

java.lang.Object
  ucl.physiol.neuroconstruct.project.GeneratedCellPositions

public class GeneratedCellPositions
extends Object

Storage for the positions generated when the Generate cell positions... button is pressed

Author:

Padraig Gleeson

Nested Class Summary

class

GeneratedCellPositions.CachedCellPosition

Constructor Summary

GeneratedCellPositions(Project project)

Method Summary

void	addPosition(String cellGroupName, int cellIndex, float xPos, float yPos, float zPos)
void	addPosition(String cellGroupName, PositionRecord posRecord)
String	details()
String	details(boolean html)
ArrayList<PositionRecord>	getAllPositionRecords()
String	getHtmlReport()
Iterator<String>	getNamesGeneratedCellGroups()
SimpleXMLElement	getNetworkMLElement()
ArrayList<SimpleXMLElement>	getNetworkMLElements(NeuroMLConstants.NeuroMLVersion version)
ArrayList<String>	getNonEmptyCellGroups()
int	getNumberInAllCellGroups()
int	getNumberInCellGroup(String cellGroupName)
int	getNumberNonEmptyCellGroups()
int	getNumberPositionRecords()
Point3f	getOneCellPosition(String cellGroupName, int index)
ArrayList<PositionRecord>	getPositionRecords(String cellGroupName)
long	getRandomSeed()
void	loadFromFile(File positionFile)
static void	main(String[] args)
void	reset()
void	saveToFile(File positionFile)
void	setRandomSeed(long rs)
String	toLongString(boolean html)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GeneratedCellPositions

public GeneratedCellPositions(Project project)

Method Detail

reset

public void reset()

setRandomSeed

public void setRandomSeed(long rs)

getRandomSeed

public long getRandomSeed()

addPosition

public void addPosition(String cellGroupName,
                        int cellIndex,
                        float xPos,
                        float yPos,
                        float zPos)

addPosition

public void addPosition(String cellGroupName,
                        PositionRecord posRecord)

getPositionRecords

public ArrayList<PositionRecord> getPositionRecords(String cellGroupName)

getAllPositionRecords

public ArrayList<PositionRecord> getAllPositionRecords()

getNamesGeneratedCellGroups

public Iterator<String> getNamesGeneratedCellGroups()

getNonEmptyCellGroups

public ArrayList<String> getNonEmptyCellGroups()

getNumberInAllCellGroups

public int getNumberInAllCellGroups()

getNumberNonEmptyCellGroups

public int getNumberNonEmptyCellGroups()

getNumberInCellGroup

public int getNumberInCellGroup(String cellGroupName)

getOneCellPosition

public Point3f getOneCellPosition(String cellGroupName,
                                  int index)

getNumberPositionRecords

public int getNumberPositionRecords()

getHtmlReport

public String getHtmlReport()

toString

public String toString()

Overrides:

toString in class Object

details

public String details()

details

public String details(boolean html)

toLongString

public String toLongString(boolean html)

saveToFile

public void saveToFile(File positionFile)
                throws IOException

Throws:

IOException

loadFromFile

public void loadFromFile(File positionFile)
                  throws IOException

Throws:

IOException

getNetworkMLElement

public SimpleXMLElement getNetworkMLElement()
                                     throws NeuroMLException

Throws:

NeuroMLException

getNetworkMLElements

public ArrayList<SimpleXMLElement> getNetworkMLElements(NeuroMLConstants.NeuroMLVersion version)
                                                 throws NeuroMLException

Throws:

NeuroMLException

main

public static void main(String[] args)